TABLE 5.
Recombination analyses of reptarenavirus S segments
| Breakpoint positions |
Recombinant sequence | Minor parental sequence(s) | Major parental sequence(s) |
P value by detection method: |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| In alignment |
In recombinant sequence |
||||||||||||
| Begin | End | Begin | End | RDP | GENECONV | Bootscan | Maxchi | Chimaera | SiSscan | 3Seq | |||
| 1618 | 4014 | 1565 | 3677 | KP071578 | MH48088, MH503957 | KP071502, KP071501, KX527580 | NSc | 3.28 × 10−58 | 4.69 × 10-55 | 8.43 × 10−40 | 2.36 × 10−10 | 1.16 × 10−61 | 5.62 × 10−190 |
| 3998 | 1827 | 3351 | 1443 | NC_023761 | KP071630 | KR870016 | NS | 2.38 × 10−88 | 3.24 × 10−74 | 1.61 × 10−44 | 6.54 × 10−48 | 1.19 × 10−55 | 2.67 × 10−183 |
| 4002 | 1910 | 3483 | 1528 | KP071474b | MH483056 | KX527580, KP071501, KP071502 | NS | 2.16 × 10−69 | 6.59 × 10−49 | 1.71 × 10−35 | 5.99 × 10−21 | 4.73 × 10−51 | 3.12 × 10−7 |
| 1828 | 3940 | 1407 | 3326 | NC_039007b | Unknown | KP071630 | NS | NS | 4.59 × 10−11 | 4.10 × 10−18 | 1.19 × 10−7 | 4.62 × 10−36 | 8.88 × 10−50 |
| 1744a | 1916 | 1402a | 1545 | KP071559b | MN567064 | KP071473 | NS | 3.55 × 10−9 | 6.75 × 10−5 | 8.359 × 10−7 | 1.06 × 10−4 | 7.70 × 10−7 | NS |
a
The actual breakpoint position is undetermined.
b
The recombinant sequence may have been misidentified (one of the identified parents might be the recombinant).
c
NS, nonsignificant.