TABLE 1.
Rabbit and insect sampling and pooling details
| Library | Sitea | Species | Sample type |
No. of samples in RNA-Seq pool |
|---|---|---|---|---|
| Rabbit tissues | ||||
| GUN-Bl | 1 | Oryctolagus cuniculus | Blood | 20 |
| GUN-Li | 1 | Oryctolagus cuniculus | Liver | 20 |
| GUN-Lu | 1 | Oryctolagus cuniculus | Lung | 20 |
| GUN-Duo | 1 | Oryctolagus cuniculus | Duodenum | 20 |
| GUN-CC | 1 | Oryctolagus cuniculus | Cecal content | 20 |
| Gudg-Bl | 2 | Oryctolagus cuniculus | Blood | 18 |
| Gudg-Li | 2 | Oryctolagus cuniculus | Liver | 18 |
| Gudg-Lu | 2 | Oryctolagus cuniculus | Lung | 18 |
| Gudg-Duo | 2 | Oryctolagus cuniculus | Duodenum | 18 |
| Gudg-CC | 2 | Oryctolagus cuniculus | Cecal content | 18 |
| Arthropods | ||||
| GUN-F | 1 | Spilopsyllus cuniculib | Entire fleas grouped by rabbit | >70 fleas from 8 rabbits |
| GUN-ChV | 1 | Chrysomya varipes | Entire fly | 10 |
| GUN-Chsp | 1 | Chrysomya rufifacies/albicepsb | Entire fly | 10 |
| GUN-CaV | 1 | Calliphora vicina | Entire fly | 10 |
| GUN-CaA | 1 | Calliphora augur | Entire fly | 10 |
| GUN-Sasp | 1 | Sarcophaga impatiensb | Entire fly | 2 |
| Gudg-F | 2 | Spilopsyllus cuniculib | Entire fleas grouped by rabbit | >50 fleas from 7 rabbits |
| Gudg-CaA | 2 | Calliphora augur | Entire fly | 10 |
| Gudg-Un | 2 | Musca vetustissima | Entire fly | 2 |
a
Site 1, CSIRO Crace, Gungahlin; Site 2, Gudgenby Valley in Namadgi National Park.
b
Species designation based on RNA-Seq data.