Table 1.

Sequencing and annotation statistics for in vitro infection experiments.

Sample name	Total reads in sample	Reads confidently mapped to Genome	Median unique genes detected per cell	Median UMI counts per cell	Total genes detected in sample
Uninfected	364,378,131	84.7%	5,680	40,998	17,796
DENV-1 infected	436,057,561	84.7%	5,416	37,282	18,410
DENV-1 infected NS1pos	478,167,079	86.1%	5,530	40,664	18,719
DENV-1 infected NS1pos + DENV primer	443,086,874	88.7%	5,507	39,951	18,610