Figure 2.

The scRNA-Seq Browser resolves gene expression connected to developmental time. A, Temporal reference map derived from pseudotime analysis of all cells aids in linking expression to stages of differentiation. B and C, Gene expression along individual developmental trajectories provides additional information on temporal expression dynamics associated with differentiation. B, An expression heat map of selected genes dynamically expressed across a pseudotime trajectory is produced. The heat map is oriented with expression in meristematic cells to the left and in mature cells to the right. C, Scatterplots depicting expression dynamics for genes at individual cell resolution along pseudotime are simultaneously produced. Heat maps and scatterplot graphs are downloadable as .png files.