Table 2.
Hspa13 mRNA was increased in LPS-induced PBs/PCs.
| Gene symbol | Affymetrix microarray | RNA-sequencing | |||||
|---|---|---|---|---|---|---|---|
| Fold change | Regulation | None | LPS | The ratio of LPS to none | |||
| 1st | 2nd | ||||||
| B-cell marker | Cd19 | 0.21 | 0.32 | Down | 20349.00 | 15874 | 0.78 |
| Ms4a1 | 0.43 | 0.52 | Down | 25484.96 | 15411 | 0.60 | |
| GC B cell marker | Pax5 | 0.09 | 0.29 | Down | 30458.14 | 11625 | 0.38 |
| Bcl6 | 0.16 | 0.17 | Down | 1865.00 | 403 | 0.22 | |
| PB/PC marker | Prdm1 | 34.05 | 27.52 | Up | 244.00 | 6055 | 24.82 |
| Xbp1 | 10.17 | 8.79 | Up | 2008.00 | 15347 | 7.64 | |
| Hspa13 | 9.23 | 8.18 | Up | 430.00 | 1907 | 4.43 | |
The splenocytes were separated from three C57BL/6 mice per group. B cells were sorted by B220 microbeads and stimulated for 3 days in vitro by 10 μg/ml LPS. The transcripts in B cells and LPS-stimulated B cells were determined by Affymetrix Microarray and RNA-sequencing. The fold change of B cell-associated genes including CD19 and Ms4a1 (CD20), GC B cell-associated genes including Pax5 and Bcl6, PB/PC-promoting genes including Prdm1 and Xbp1, and the interested gene Hspa13 in LPS-stimulated group to unstimulated group is shown. 1st and 2nd represent 2 independent experiments. Total exon fragments (values) of Cd19, Ms4a1, Pax5, Bcl6, Prdm1, Xbp1, and Hspa13 in B cells (None) and LPS-stimulated B cells (LPS) are also shown.