Table 1.
Sequence and annotation | ||||
Sequencing and assembly | ||||
Sequencing | Insert libraries: 350bp ∼ 20 kb | Illumina∼203× | Pacbio RS II: ∼3.5× | Total reads ∼90 Gb |
Assembly (scaffold) | N50 size: 790.02 kb | N90 size: 241.57 kb | Longest: 3.38 Mb | Total size: 335 Mb |
Genome annotation | ||||
Protein-coding gene | Gene models: 32,195 | Swiss-Prot hits: 12,342 | BUSCO 93.9% | Gene size: 2,948 bp |
Repetitive elements (%) | LTR: 16.1 | LINEs and SINEs: 0.96 | DNA transposon: 3.98 | Total: 49.17 |
LINE, long-interspersed retrotransposable element; LTR, long-terminal repeat; SINE, short-interspersed retrotransposable element.