Table 4.
Secretion sorting and sub-cellular location of SPs
|
Secretion pathway
|
Sub-cellular Localization
|
||||||
|---|---|---|---|---|---|---|---|
| Signal peptides | Type of SP |
Reliability
Score (%) |
Cytoplasmic | Membrane |
Secreted
(extracellular) |
Periplasmic | Final prediction site |
| OMPA_ECOLI | Sec | 0.973 | 0.85 | 5.65 | 1.38 | 2.12 | Inner Membrane |
| PPB_ECOLI | Sec | 0.949 | 0.13 | 4.11 | 0.13 | 5.64 | Periplasmic |
| OMPC_ECOLI | Sec | 0.949 | 0.18 | 7.75 | 0.08 | 1.99 | Inner Membrane |
| OMPT_ECOLI | Sec | 0.913 | 0.21 | 9.79 | 0.00 | 0.00 | Inner Membrane |
| OMPF_ECOLI | Sec | 0.908 | 0.08 | 9.92 | 0.00 | 0.00 | Inner Membrane |
| PEL2_ERWCA | Sec | 0.988 | 0.35 | 3.79 | 0.00 | 5.86 | membrane bound Periplasmic |
| PHOE_ECOLI | Sec | 0.966 | 0.00 | 9.86 | 0.14 | 0.00 | Inner Membrane |
| MALE_ECOLI | Sec | 0.979 | 0.00 | 0.00 | 0.00 | 10.00 | membrane bound Periplasmic |
| LPP_ECOLI | Sec | 0.926 | 0.00 | 7.25 | 2.75 | 0.00 | Inner Membrane |
| LAMB_ECOLI | Sec | 0.974 | 0.00 | 6.65 | 0.02 | 3.33 | Inner Membrane |
| ELBP_ECOLX | Sec | 0.899 | 0.35 | 6.81 | 1.72 | 1.72 | Inner Membrane |
| APA_MYCTU | Tat | 0.829 | 0.00 | 0.42 | 9.53 | 0.05 | Secreted |
| TIBA_ECOLX | TM segment | 0.841 | 0.00 | 9.34 | 0.50 | 0.15 | Inner Membrane |
| SAT_ECOL6 | Sec | 0.897 | 0.00 | 7.54 | 2.46 | 0.00 | Inner Membrane |
| ENTC2_STAAU | Sec | 0.973 | 0.00 | 2.25 | 7.73 | 0.02 | Secreted |
| AG43_ECOLI | TM segment | 0.928 | 0.00 | 8.39 | 1.38 | 0.22 | Inner Membrane |
| ELBH_ECOLX | Sec | 0.917 | 0.51 | 5.31 | 1.29 | 2.89 | Inner Membrane |
| HJM79_ENTHR | Sec | 0.926 | 0.00 | 10.00 | 0.00 | 0.00 | Inner Membrane |
| ENTC1_STAAU | Sec | 0.973 | 0.00 | 2.25 | 7.73 | 0.02 | Secreted |
| DRAA_ECOLX | Sec | 0.987 | 0.08 | 2.99 | 0.01 | 6.92 | membrane bound Periplasmic |