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. 2020 Apr 1;6(4):e000361. doi: 10.1099/mgen.0.000361

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© 2020 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.

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Fig. 2. — (a) Pairwise SNP distance by lineage between all Karonga strains used in the study. (b) Transmission cluster size by lineage, excluding non-clustered individuals. Clusters are defined as sampled strains (excluding non-sampled cases) linked either through direct transmission or with up to two transmission events inferred between individuals. P-values are a comparison against lineage 4 using the Wilcoxon rank sum test. (c) Median SNP distance in transmission clusters (sampled cases only). P-values are a comparison against lineage 4 using the Wilcoxon rank sum test. (d) Pairwise SNP distance between individuals in direct transmission events. P-values are a comparison against lineage 4 using the Wilcoxon rank sum test.