Table 1.
Summary of the Sequenced Plasmids. Resistance (R) or sensitivity (S) to antibiotics is as shown, with abbreviations as follows: TMP. Trimethoprim; CTX, cefotaxime; Gen, gentamicin; AMC, co-amoxiclav; TZP, piperacillin/tazobactam. Minimum inhibitory concentrations (mg l–1) for AMC and TZP are shown in parentheses. Accession number at European Nucleotide Archive
|
Strain |
Plasmid |
Inc Group |
Inc Subgroup |
Length |
Source of Infection |
ST |
TMP |
CTX |
Gen |
AMC |
TZP |
bla OXA-1 |
bla CTX-M-15 |
Accession Number |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
EC0_10 |
Urine |
ST131 |
R |
R |
R |
R (32) |
S (8) |
+ |
+ |
GCA_902668725 |
||||
|
EC0_10_C2 |
Others |
ColRNAI |
112708 |
GCA_902668725 |
||||||||||
|
EC0_10_C3 |
IncF |
IncFII/FIBA |
106970 |
GCA_902668725 |
||||||||||
|
EC0_10_C4 |
Col |
ColD |
5631 |
GCA_902668725 |
||||||||||
|
EC0_10_C5 |
Others |
na |
4082 |
GCA_902668725 |
||||||||||
|
EC0_33 |
Bile |
ST131 |
R |
R |
S |
S (8) |
S (<4) |
+ |
+ |
GCA_902668635 |
||||
|
EC0_33_C10 |
Col |
ColMG828 |
1546 |
GCA_902668635 |
||||||||||
|
EC0_33_C3 |
IncF |
IncFII/FIA |
117124 |
GCA_902668635 |
||||||||||
|
EC0_33_C4 |
Others |
p0111_1 |
98 727 |
GCA_902668635 |
||||||||||
|
EC0_33_C5 |
Others |
X4/X4TaxC |
33 138 |
GCA_902668635 |
||||||||||
|
EC0_33_C6 |
Col |
ColRNAI |
3244 |
GCA_902668635 |
||||||||||
|
EC0_4 |
Urine |
ST69 |
R |
S |
R |
S (8) |
S (<4) |
− |
− |
GCA_902668655 |
||||
|
EC0_4_C3 |
IncF |
IncFII/FIBA/P |
98 010 |
GCA_902668655 |
||||||||||
|
EC0_4_C4 |
Col |
ColD |
5631 |
GCA_902668655 |
||||||||||
|
EC0_4_C5 |
Col |
Col156 |
5166 |
GCA_902668655 |
||||||||||
|
EC0_4_C6 |
Col |
Col8282 |
4072 |
GCA_902668655 |
||||||||||
|
EC0_42 |
Respiratory |
ST131 |
R |
S |
R |
R (16) |
S (<4) |
− |
− |
GCA_902668695 |
||||
|
EC0_42_C2 |
IncF |
IncFII/FIBA |
144047 |
GCA_902668695 |
||||||||||
|
EC0_56 |
Unknown |
ST131 |
R |
R |
R |
R (16) |
S (8) |
+ |
+ |
GCA_902668675 |
||||
|
EC0_56_C3* |
IncF |
IncFII/FIBA/FIA |
155220 |
GCA_902668675 |
||||||||||
|
EC0_56_C4* |
IncF |
IncFII |
59 851 |
GCA_902668675 |
||||||||||
|
EC0_56_C5 |
Others |
− |
11 371 |
GCA_902668675 |
||||||||||
|
EC0_73 |
Unknown |
ST69 |
R |
R |
R |
R (32) |
S (8) |
− |
− |
GCA_902668625 |
||||
|
EC0_73_C3 |
IncF |
IncFII/FIBA/Q |
142696 |
GCA_902668625 |
||||||||||
|
EC0_73_C4 |
Col |
ColD |
4409 |
GCA_902668625 |
||||||||||
|
EC0_73_C5 |
Col |
Col8282 |
4072 |
GCA_902668625 |
||||||||||
|
EC0_73_C8 |
Col |
ColMG828 |
1549 |
GCA_902668625 |
||||||||||
|
EC0_76 |
Unknown |
ST131 |
R |
S |
S |
S (2) |
S (<4) |
+ |
+ |
GCA_902668665 |
||||
|
EC0_76_C3 |
IncF |
IncFII/FIBA/FIA |
115340 |
GCA_902668665 |
||||||||||
|
EC0_76_C6 |
Col |
ColBS512 |
2089 |
GCA_902668665 |
||||||||||
|
EC1_20 |
Unknown |
ST131 |
S |
S |
S |
S (4) |
S (<4) |
− |
− |
GCA_902668595 |
||||
|
EC1_20_C2 |
IncF |
IncFII/FIBA/FIA |
50 894 |
GCA_902668595 |
||||||||||
|
EC1_20_C3 |
Col |
ColRNAI |
5631 |
GCA_902668595 |
||||||||||
|
EC1_20_C4 |
Col |
Col8282 |
4082 |
GCA_902668595 |
||||||||||
|
EC1_25 |
Urine |
ST131 |
S |
S |
S |
R (32) |
S (8) |
+ |
− |
GCA_902668705 |
||||
|
EC1_25_C2 |
IncF |
IncFII/FIA |
132945 |
GCA_902668705 |
||||||||||
|
EC1_25_C4 |
Col |
ColK |
6888 |
GCA_902668705 |
||||||||||
|
EC1_25_C5 |
Col |
ColMG828 |
1546 |
GCA_902668705 |
||||||||||
|
EC1_36 |
Urine |
ST69 |
R |
S |
S |
S (8) |
S (<4) |
− |
− |
GCA_902668585 |
||||
|
EC1_36_C2 |
IncF |
IncFII/FIBA/Q |
149279 |
GCA_902668585 |
||||||||||
|
EC1_36_C3 |
Col |
Col156 |
5165 |
GCA_902668585 |
||||||||||
|
EC1_36_C4 |
Col |
Col8282 |
4072 |
GCA_902668585 |
||||||||||
|
EC1_36_C5 |
Others |
− |
2377 |
GCA_902668585 |
||||||||||
|
EC1_5 |
Urine |
ST69 |
R |
S |
S |
S (4) |
S (<4) |
− |
− |
GCA_902668645 |
||||
|
EC1_5_C2 |
IncF |
IncFII/FIBA/Q |
147684 |
GCA_902668645 |
||||||||||
|
EC1_50 |
Urine |
ST131 |
R |
R |
R |
R (16) |
I (16) |
+ |
+ |
GCA_902668605 |
||||
|
EC1_50_C2 |
IncF |
IncFII/FIBA/FIA |
170727 |
GCA_902668605 |
||||||||||
|
EC1_6 |
Urine |
ST131 |
R |
R |
R |
R (32) |
R (128) |
+ |
+ |
GCA_902668615 |
||||
|
EC1_6_C5 |
IncF |
IncFII/FIBA/FIA |
75 763 |
GCA_902668615 |
||||||||||
|
EC1_6_C6 |
Others |
X1TaxC |
33 703 |
GCA_902668615 |
||||||||||
|
EC1_6_C9 |
Col |
ColBS512 |
2089 |
GCA_902668615 |
||||||||||
|
EC1_72 |
Urine |
ST131 |
R |
R |
R |
R (16) |
S (8) |
+ |
+ |
GCA_902668685 |
||||
|
EC1_72_C13 |
Others |
− |
1549 |
GCA_902668685 |
||||||||||
|
EC1_72_C15 |
Col |
ColMG828 |
1459 |
GCA_902668685 |
||||||||||
|
EC1_72_C4 |
IncF |
IncFII/FIA |
91 615 |
GCA_902668685 |
||||||||||
|
EC1_72_C5 |
IncF |
IncFII |
70 705 |
GCA_902668685 |
||||||||||
|
EC1_72_C7 |
Col |
Col156 |
5164 |
GCA_902668685 |
||||||||||
|
EC1_72_C9 |
Col |
Col8282 |
4087 |
GCA_902668685 |
||||||||||
|
EC1_77 |
Unknown |
ST131 |
R |
S |
S |
S (8) |
S (8) |
− |
− |
GCA_902668715 |
||||
|
EC1_77_C2 |
IncF |
IncFII/FIBA |
108851 |
GCA_902668715 |
||||||||||
|
EC1_87 |
Bile |
ST131 |
R |
S |
R |
S (8) |
S (<4) |
− |
− |
GCA_902668575 |
||||
|
EC1_87_C5 |
IncF |
IncFII/FIBA/FIA |
170376 |
GCA_902668575 |