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Characterization of plasmid diversity. Species phylogeny based on the concatenation of 305 core genes using the neighbour-joining method. Branches are coloured by genospecies. Circles represent the genomic compartments observed in each strain. Chromids (Rh01 and Rh02) and plasmids (Rh03, Rh04, Rh05, Rh06, Rh07, Rh08) were defined based on the genetic similarity of the RepA plasmid partitioning protein.
