| RNA | ribonucleic acid |
| bp | base pair |
| nt | nucleotide |
| rRNA | ribosomal RNA |
| mRNA | messenger RNA |
| snoRNP | small nucleolar ribonucleoprotein |
| snoRNA | small nucleolar RNA |
| snRNA | small nuclear RNA |
| G | guanosine |
| C | cytosine |
| A | adenosine |
| T | thymidine |
| U | uridine |
| Ψ | pseudouridine |
| 2′Ome | 2′-O-methyl |
| RMRP | RNA component of mitochondrial RNA processing endonuclease |
| TERC | telomerase, RNA component |
| SNU13 | small nuclear ribonucleoprotein 13 |
| NOP58 | nucleolar protein 58 |
| NOP56 | nucleolar protein 56 |
| FBL | fibrillarin |
| CRISPR | clustered regularly interspaced short palindromic repeats |
| NHP2 | non-histone Protein 2 |
| NOP10 | nucleolar Protein 10 |
| Gar1 | glycine/arginine rich-domain containing protein 1 |
| DKC1 | dyskerin |
| Cbf5 | centromere binding factor 5 |
| TBF1 | TTAGGG repeat-binding factor 1 |
| Rap1 | repressor/activator site binding protein 1 |
| NME1 | nuclear mitochondrial processing endoribonuclease |
| RNase | ribonuclease |
| TGS1 | trimethylguanosine synthetase 1 |
| RPS3 | ribosomal protein small subunit 3 |
| RPL7A | ribosomal protein large subunit 7A |
| RPL13A | ribosomal protein large subunit 13A |
| GAS5 | growth arrest specific 5 |
| mTOR | mammalian target of rapamycin |
| HSP90 | heat shock protein 90 |
| R2TP | Rvb1, Rvb2, Tah1, Pih1 complex |
| Rvb1 | RuvB-like protein 1 |
| Rvb2 | RuvB-like protein 2 |
| Tah1 | TPR repeat-containing protein associated with Hsp90 |
| Pih1 | protein interacting with Hsp90 1 |
| RUVBL1 | RuvB-like AAA ATPase 1 |
| RUVBL2 | RuvB-like AAA ATPase 2 |
| RPAP3 | RNA polymerase II associated protein 3 |
| RIH1D1 | PIH1 domain containing 1 |
| snR10 | snoRNA 10 |
| snR30 | snoRNA 30 |
| Sbp1 | suppressor of PaB mutant 1 |
| SSU | small subunit |
| DNase | deoxyribonuclease |
| hU3-55K | human U3 component, 55 kDa |
| Rrp9 | ribosomal RNA processing enzyme 9 |
| cDNA | complementary DNA |
| CRAC | crosslinking and high-throughput analysis of cDNAs |
| Sof1 | suppressor of fibrillarin 1 |
| Mpp10 | M-phase phosphoprotein 10 |
| MDa | megadalton |
| rDNA | ribosomal DNA |
| U3 | uridine-rich RNA 3 |
| ETS | external transcribed spacer |
| ITS | internal transcribed spacer |
| S | Svedberg units |
| MRP | mitochondrial RNA processing enzyme |
| Cas9 | CRISPR-associated protein 9 |
| UTR | untranslated region |
| KRE33/RRA1 | killer toxin resistant 33/ribosomal RNA cytosine acetyltransferase 1 |
| NAT10 | N-Acetyltransferase 10 |
| MEF | mouse embryonic fibroblast |
| KRAS | kirsten rat sarcoma viral oncogene homolog |
| RAS | rat sarcoma |
| EM | electron microscopy |
| tiRNA | tRNA-derived stress-induced RNA |
| tRF | tRNA fragment |
| YB-1 | Y-box protein 1 |
| CMCT | N-Cyclohexyl-N′-(2′morholinoethyl)carbodiimide metho-p-toluenesulfonate |
| HCT116 | human colon cancer 116 |