Table 2.
The prevalence of opportunistic bacteria at different threshold values for the number of reads per ASV.
| Opportunistic Pathogen |
Found in Samples, % (10–100 Reads Per ASV) | Found in Samples, % (100–500 Reads Per ASV) | Found in Samples, % (>500 Reads Per ASV) |
|---|---|---|---|
| Bacillus cereus group | 100 | 66.7 | 52.4 |
| Pseudomonas aeruginosa | 38.1 | 23.8 | 9.6 |
| Cronobacter spp. | 57.2 | 42.9 | 14.3 |
| Escherichia coli | 61.9 | 28.6 | 14.3 |
| Listeria innocua | 38.1 | 14.3 | 4.8 |
| Citrobacter spp. | 14.3 | 9.5 | 4.8 |
| Enterococcus spp. | 90.5 | 66.7 | 14.3 |
| Klebsiella pneumoniae | 28.6 | 28.6 | 14.3 |