Table 3.
Genotype | Metrics | De novo | Gap closed | Filtered > 500 bp | Reference guided |
---|---|---|---|---|---|
Corno | Number of scaffolds | 1,994,391 | 1,994,391 | 313,692 | 4,688 |
Total size of scaffolds (bp) | 3,238,887,426 | 3,156,174,802 | 2,888,201,005 | 2,952,523,284 | |
Longest scaffold | 977,366 | 967,969 | 967,969 | 304,682,413 | |
Shortest scaffold | 100 | 100 | 500 | 800 | |
Average size (scaffolds, bp) | 1,624 | 1,583 | 9,207 | 629,804 | |
N50 | 47,527 | 47,339 | 55,304 | 244,870,051 | |
L50 | 15,812 | 15,493 | 12,873 | 6 | |
% of Ns in scaffolds | 6.63 | 0.04 | 0.03 | 2.97 | |
Number of genes | 35,484 | — | — | 29,204 | |
Cuneo | Number of scaffolds | 1,209,809 | 1,209,809 | 183,951 | 4,062 |
Total size of scaffolds (bp) | 3,015,917,026 | 3,003,730,531 | 2,856,195,490 | 2,888,888,923 | |
Longest scaffold | 785,116 | 783,752 | 783,752 | 298,303,901 | |
Shortest scaffold | 100 | 100 | 500 | 800 | |
Average size (scaffolds, bp) | 2,493 | 2,483 | 15,527 | 711,199 | |
N50 | 53,466 | 53,354 | 57,217 | 239,928,576 | |
L50 | 14,568 | 14,539 | 13,205 | 6 | |
% of Ns in scaffolds | 3.92 | 0.04 | 0.03 | 1.76 | |
Number of genes | 35,518 | — | — | 29,300 | |
Quadrato | Number of scaffolds | 1,773,028 | 1,773,028 | 289,008 | 4,688 |
Total size of scaffolds (bp) | 3,196,719,955 | 3,111,823,022 | 2,880,333,039 | 2,938,129,169 | |
Longest scaffold | 684,241 | 678,098 | 678,098 | 303,210,577 | |
Shortest scaffold | 100 | 100 | 500 | 800 | |
Average size (scaffolds, bp) | 1,803 | 1,755 | 9,966 | 626,734 | |
N50 | 46,314 | 46,168 | 52,573 | 243,527,465 | |
L50 | 16,181 | 15,845 | 13,497 | 6 | |
% of Ns in scaffolds | 6.68 | 0.04 | 0.03 | 2.74 | |
Number of genes | 35,538 | — | — | 29,288 | |
Tumaticot | Number of scaffolds | 1,191,858 | 1,191,858 | 173,746 | 4,322 |
Total size of scaffolds (bp) | 3,088,650,784 | 3,016,051,866 | 2,871,230,234 | 2,901,582,212 | |
Longest scaffold | 788,112 | 780,295 | 780,295 | 300,041,623 | |
Shortest scaffold | 100 | 100 | 500 | 800 | |
Average size (scaffolds, bp) | 2,591 | 2,531 | 16,525 | 671,352 | |
N50 | 58,072 | 57,584 | 61,963 | 240,199,676 | |
L50 | 13,578 | 13,360 | 12,147 | 6 | |
% of Ns in scaffolds | 6.09 | 0.03 | 0.02 | 1.64 | |
Number of genes | 35,723 | — | — | 29,465 |
1The reference guided assembly contained also chromosome zero.