Table 6.

SNP/Indel (DP > 15) statistics identified in the four pepper genotypes with their relative frequency for each analysed genotype.

Genotype	unfiltered SNP/Indel	SNP/Indel	SNP	Indel	N°SNP/Indel (%)	SNP/Indel in 1000 bp	1 SNP/Indel every (bp)	N° SNP/Indel Homozygosis	SNP/Indel Heterozygosis	Heteroz. (%)
Cuneo	17,678,065	16,649,886	16,033,452	616,434	0.586%	5.86	170.6	13,228,374	3,421,512	0.112%
Quadrato	18,972,695	18,019,108	17,347,941	671,167	0.593%	5.93	168.5	12,019,779	5,999,329	0.196%
Corno	18,941,981	18,076,252	17,389,251	687,001	0.585%	5.85	171.0	12,082,809	5,993,443	0.196%
Tumaticot	17,224,938	16,330,222	15,701,405	628,817	0.558%	5.58	179.3	13,311,815	3,018,407	0.098%

The reference genome (‘CM334’) considered (without N) is of length equal to 3.065.158.452 bp.