Table 3.
Parameter | Top Main Protease Protein Inhibitors of SARS-CoV-2 |
||||
---|---|---|---|---|---|
Asiatic acid | Guajaverin | Avicularin | Withaferin | ||
Physicochemical parameters | Formula | C30H48O5 | C20H18O11 | C20H18O11 | C28H38O6 |
Molecular weight | 488.70 g/mol | 434.35 g/mol | 434.35 g/mol | 470.60 g/mol | |
No. H-bond acceptor | 5 | 11 | 11 | 6 | |
No. H-bond donors | 4 | 7 | 7 | 2 | |
Molar Refractivity | 139.24 | 104.19 | 104.19 | 127.49 | |
TPSA | 97.99 Å2 | 190.28 Å2 | 190.28 Å2 | 96.36 Å2 | |
Lipophilicity | Log Po/w (iLOGP) | 2.95 | 1.77 | 1.86 | 3.24 |
Log Po/w (XLOGP3) | 5.70 | 0.43 | 0.98 | 3.83 | |
Log Po/w (WLOGP) | 5.03 | 0.10 | 0.10 | 3.35 | |
Log Po/w (MLOGP) | 4.14 | −2.06 | −2.06 | 2.75 | |
Log Po/w (SILICOS-IT) | 3.96 | −0.10 | 0.06 | 3.93 | |
Consensus Log Po/w | 4.36 | 0.03 | 0.19 | 3.42 | |
Pharmacokinetics | GI absorption | High | Low | Low | High |
BBB permeant | No | No | No | No | |
P-gp substrate | Yes | No | No | Yes | |
CYP1A2 inhibitor | No | No | No | No | |
CYP2C19 inhibitor | No | No | No | No | |
CYP2C9 inhibitor | No | No | No | No | |
CYP2D6 inhibitor | No | No | No | No | |
CYP3A4 inhibitor | No | No | No | No | |
Log Kp (skin permeation) | - 5.23 cm/s | −8.64 cm/s | −8.25 cm/s | −6.45 cm/s | |
Water Solubility | Log S (ESOL) | −6.33 | −2.99 | −3.27 | −4.97 |
Solubility | 2.29e-4 mg/ml; 4.69e-7 mol/l |
4.47e-01 mg/ml; 1.03e-03 mol/l | 2.34e-01 mg/ml; 5.39e-04 mol/l | 5.01e-03 mg/ml; 1.07e-05 mol/l | |
Class | Poorly soluble | Soluble | Soluble | Moderately soluble | |
Log S (SILICOS-IT) | −4.28 | −1.94 | −2.07 | −3.79 | |
Solubility | 2.59e-2 mg/ml; 5.31e-05 mol/l | 4.96e+00 mg/ml; 1.14e-02 mol/l | 3.71e+0 mg/ml; 8.55e-3 mol/l | 7.54e-02 mg/ml; 1.60e-04 mol/l | |
Class | Moderately soluble | Soluble | Soluble | Soluble | |
Medicinal Chemistry | Leadlikeness | No; 2 violations: MW > 350, XLOGP3>3.5 | No; 1 violation: MW > 350 | No; 1 violation: MW > 350 | No; 2 violations: MW > 350, XLOGP3>3.5 |
Bioavailability Score | 0.56 | 0.17 | 0.17 | 0.55 | |
PAINS | 0 alert | 1 alert: catechol_A | 1 alert: catechol_A | 0 alert | |
Synthetic accessibility | 6.56 | 5.05 | 5.04 | 6.83 |