Table 3.
Gene component annotation for genome-wide significant SNPs.
| Chromosome | Position | Significant SNP Name | Gene Component | Gene | Gene Description | Metabolite from First Sampling Time (p-Value) | Metabolite from Second Sampling Time (p-Value) | Metabolite from Combined Two Sampling Times (p-Value) |
|---|---|---|---|---|---|---|---|---|
| 1 | 74467285 | ALGA0004000 | 6th intron | FBXL4 (NM_001171752) | F-box and leucine rich repeat protein 4 | NA | Isovalerylcarnitine (2.79 × 10−8), Propionylcarnitine (8.32 × 10−10) | NA |
| 1 | 75151870 | ALGA0004041 | 1st intron | CCNC (NM_001190160) | Cyclin C | NA | Isovalerylcarnitine (2.79 × 10−8), Propionylcarnitine (8.32 × 10−10) | NA |
| 1 | 75167426 | ALGA0004042 | 9th intron/8th intron # | CCNC (NM_001190160) | Cyclin C | NA | Isovalerylcarnitine (2.79 × 10−8), Propionylcarnitine (8.32 × 10−10) | NA |
| 2 | 83663964 | MARC0110390 | 7th intron | SFXN1 (NM_001098602) | Sideroflexin 1 | Pyruvic acid (1.25 × 10−7) | NA | NA |
| 6 | 135424176 | ASGA0093565 | 8th intron | DNAJC6 (NM_001145378) | DnaJ heat shock protein family (Hsp40) member C6 | 1-hexadecyl-sn-glycero-3-phosphocholine (2.78 × 10−9), 1-myristoyl-sn-glycero-3-phosphocholine (1.35 × 10−8), LysoPC (16:0) (1.22 × 10−7) | NA | NA |
| 11 | 26591544 | ALGA0061605 | 5th intron/9th intron # | MTRF1 (NM_001243580) | Mitochondrial translation release factor 1 | NA | Aspartic acid (2.29 × 10−7) | NA |
Note: NA indicates not applicable. # The annotation of the latest porcine RefSeq database (Sscrofa11.1/susScr11).