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. 2020 Jun 9;11:2902. doi: 10.1038/s41467-020-16700-z

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — Whole-sequence alignments of the sex-determining region (SDR) in M (a), F (b), and H (c) haplotypes against the Vv vinifera Cabernet Sauvignon chromosome 2 hap1 (H) reference. The figures illustrate that M haplotypes (a) tend to be longer than either F (b) or H (c) haplotypes and there is a large inversion in the M haplotype of M. rotundifolia. d Schematic representations of the SDR in four of the 11 genomes analyzed for this study. From top to bottom, the figure illustrates the haplotypes of hermaphrodite Vv vinifera Cabernet Sauvignon (HF), male Vv sylvestris DVIT3351.27 (MF), female Vv sylvestris DVIT3603.07 (FF), male V. arizonica (MF), and male M. rotundifolia (MF). Each haplotype is annotated with arrows and rectangles to depict annotated genes. White arrows depict genes that are not sex-linked. Genes affected by nonsense mutations are indicated with an X. The scale above the haplotypes denotes the position on the Cabernet Sauvignon reference. The filled, black triangles on this scale mark the position of the sex-linked genetic markers VVIB23¹⁷ and VSVV010¹⁰; the white-filled triangle represents the amplicon VSVV011¹⁰, which is not linked to the SDR. Source data are provided as a Source Data file.