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. 2020 Jun 3;11:860. doi: 10.3389/fmicb.2020.00860

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Copyright © 2020 Hoque, Istiaq, Clement, Gibson, Saha, Islam, Abir, Sultana, Siddiki, Crandall and Hossain.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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The strain-level taxonomic profile of microbiota associated with bovine clinical mastitis (CM). Taxonomic dendrogram showing the top bacterial microbiome of bovine CM milk. Color ranges identify different strains within the tree. Taxonomic dendrogram in the midpoint rooted phylogenetic tree was generated with the top 200 abundant unique strains of bacteria in CM milk metagenome based on the maximum likelihood method in Clustal W and displayed with iTOL (interactive Tree Of Life). Each node represents a single strain shared among more than 50% of the samples at a relative abundance of >0.0006% of the total bacterial community. Strains and/or species are color-coded by different order of bacteria present in >80% of samples. The strains in the phylogenetic tree are also available in Supplementary Material.