Table 3.
Prediction of functional effects of SNPs on protein structure.
| SNP | Substitution | SIFT |
Polyphen |
Provean |
SNAP-2 |
|||||
|---|---|---|---|---|---|---|---|---|---|---|
| Prediction | Score | Prediction | Score | Prediction | Score | Prediction | Score | Accuracy | ||
| rs12329760 | V197M | Deleterious | 0.006 | Probably damaging | 0.999 | Neutral | −1.891 | Effect | 49 | 71% |
| rs75603675 | G8V | Tolerated | 0.201 | Benign | 0.386 | Neutral | 0.401 | Neutral | −16 | 57% |
| rs75603675 | G8D | Not found | Possibly damaging | 0.815 | Neutral | 0.222 | Neutral | −8 | 53% | |