Table 6.
Identified important residues in nCoV S-protein RBD and their hydrogen bond interactions sustained during the 100 ns simulation run time.
MDS run time (ns) | nCoV Spike protein RBD residues |
---|---|
10, 20, 30, 40, 50, 60, 70, 80, 90, 100 | Gln 493 |
10, 20, 30, 40, 60, 70, 80, 90, 100 | Gln 498 |
10, 20, 30, 40, 60, 80, 90, 100 | Asn 487 |
20, 40, 50, 60, 70, 80, 90, 100 | Tyr 505 |
30, 40, 50, 60, 70, 80, 90, 100 | Lys 417 |
10, 20, 30, 70, 80, 90, 100 | Thr 500 |
10, 20, 30, 40, 70, 100 | Tyr 489 |
10, 20, 40, 70, 90, 100 | Asn 501 |
40, 50, 60, 80, 90, 100 | Tyr 453 |
20, 30, 50, 60, 80 | Ala 475 |
20, 70, 90, 100 | Leu 492 |
10, 20, 30 | Gly 502 |
20, 40, 90 | Phe 490 |
20, 30 | Gly 496 |
60, 80 | Glu 484 |
30 | Gly 446 |
50 | Arg 408, Tyr 449 |