Table 1.
Primers used in this study.
| Primers Used for PCR | ||||
| Target Sequence | Primer Name | Primer Sequence | Product Size (bp) | Source |
| 16S rRNA | 27F 1492R |
AGAGTTTGATCMTGGCTCAG GGYTACCTTGTTACGACTT |
1465 | [31] |
| bssA | bssA_F1 bssA_R2 |
GACGARTTCATCRTCGGCTACCACGC AGCAGRTTGSCYTTCTGRTTYTTCTG |
1546 | Junca, H. |
| bcrC | bcrC_F bcrC_R |
CGHATYCCRCGSTCGACCATCG CGGATCGGCTGCATCTGGCC |
800 | [32] |
| bbsC region | bbsD_F bbsB_R | GGCGGGATGTTGTCCTATGG GCTTCGGCCCTATTTGCTTG |
1823 | this study |
| Primers Used for RT-qPCR | ||||
| Target Sequence | Primer Name | Primer Sequence | Product Size (bp) | Source |
| 16S rRNA | 16S_F 16S_R |
TGATGAAGGCCTTAGGGTTG CCAGGGCTTTCACTTCTGAC |
170 | Marín, V. |
| bcrC | 2bcrC_F 2bcrC_R |
CATGATCTTCCCGTT TCCTTCAGCTCCTTC |
159 | Marín, V. |
| bssA | bssA_F3 bssA_R3 |
CGTCCTTCGCCTCGGGTTAC CATCGCCTGCCAGTTGTCAATC |
188 | Marín, V. |
| Primers Used for RT-PCR | ||||
| Target Sequence | Primer Name | Primer Sequence | Product Size (bp) | Source |
| Intergenic region bssD-bssA | bssD-bssA_F bssD-bssA_R |
CGCATTCACATCCCGGTCATC CAGGACGTTGGCGGTCATATT |
575 | this study |
| Intergenic region bssA-bssE | bssA-bssE_F bssA-bssE_R |
CTGAATTGCGACCTCTGAGC GCTTGCGCGAGATATTACGG |
587 | this study |
| Intergenic region bssE-bssF |
bssE-bssF_F bssE-bssF_R |
GGCAGGTCTGGATGGATGAG CGTTTGGGAGGGGTATCGTC |
504 | this study |
| Intergenic region bssF-bssG | bssF-bssG_F bssF-bssG_R |
GCCATTCGCCGTTTCAACAA GCGAACCTGGGAAAACATCG |
482 | this study |
| Intergenic region bssG-bssP |
bssG-bssP_F bssG-bssP_R |
CCTTGGATGAAGGCCGTAAC CCGAAGATCAGCCACTTTCC |
560 | this study |
| Intergenic region bssP-bssI | bssP-bssI_F bssP-bssI_R |
CCCGTTTCAAGCGATGGTTC GAACTCCCTCCTTGCGGTAG |
493 | this study |
| Intergenic region bssI-bssJ | bssI-bssJ_F1 bssI-bssJ_R1 |
CGAATTCCCCAGCGACTCA ATCTCGAACACGCCCACTC |
561 | this study |
| Intergenic region bssJ-bssK | bssJ-bssK_F bssJ-bssK_R |
GCCCCCTACTTCAAATGGCT GTATCCCAATCCAGCGGAGG |
480 | this study |
| Intergenic region bssK-bssL | bssK-bssL_F bssK-bssL_R |
AGTTGATTTCCTACGGGCGG GTGAGCAATCCACATGACGC |
515 | this study |
| Intergenic region tdiC-tdiR | tdiC-tdiR_F tdiC-tdiR_R |
GAGATCATGACGACGGAGGT TAGAAAGATCAGCGGCAGCG |
500 | this study |
| Intergenic region tdiR-tdiS | tdiR-tdiS_F tdiR-tdiS_R |
CGCCTCAGCAAGGAAGTGTT GGAAGCAAATGCCAACGGG |
435 | this study |
| xylR | xylR_F xylR_R |
TGTCGAGCGTGGCTATTACTC CTTCCACCAAATTCTCGGGC |
545 | this study |
| Intergenic region bbsA-bbsB | bbsA-bbsB_F bbsA-bbsB_R |
GGGCAGCTTGATTTTCCCAA GGCGATGAACACATCTCGTTG |
436 | this study |
| Intergenic region bbsB-bbsC | bbsB-bbsC_F bbsB-bbsC_R |
GGCGGGATGTTGTCCTATGG ACCGATTCCGGAAGGAAAGG |
535 | this study |
| Intergenic region bbsC-bbsD | bbsC-bbsD_F bbsC-bbsD_R |
CGGCAAGAGCGCCTATTTCT GGTGATTCCATTGCGTCCCA |
611 | this study |
| Intergenic region bbsD-bbsE | bbsD-bbsE_F bbsD-bbsE_R |
CTGGGACGCAATGGAATCAC GCGCAAAAACACCTCCCTG |
542 | this study |
| Intergenic region bbsE-bbsF | bbsE-bbsF_F1 bbsE-bbsF_R1 |
ATACGCCTATCGGACCTCGG GCTCTGCATGAACCACTTCC |
380 | this study |
| Intergenic region bbsF-bbsG | bbsF-bbsG_F bbsF-bbsG_R |
CGCGGTGTTTTCCGATGAAG TTCAGCATTGCGTGCTCTTG |
550 | this study |
| Intergenic region bbsG-bbsH | bbsG-bbsH_F bbsG-bbsH_R |
CGGGAAACCGGCATCGAATA TTCATCTGGGGGATGAGGGG |
428 | this study |