Table 1.
Commercial DNA extraction and purification kits used in this study.
| Commercial Kit | Manufacturer | Cell Disruption Method * |
|---|---|---|
| DNA MinipPrep kit | ZymoBIOMICS | BB/ SB |
| DNeasy Blood and Tissue kit | Qiagen | PL + CL/ SB |
| DNeasy PowerSoil kit | Qiagen | BB/ SB |
| DNeasy Ultra Clean Microbial kit | Qiagen | BB/ SB |
| Echolution Tissue DNA Micro kit | BioECHO | PL + CL/ SB |
| GenElute Bacterial Genomic DNA kit | Sigma Aldrich | PL + CL/ SB |
| In-house protocol, based on DNA Investigator kit | Qiagen | BB/ SB |
| innu PREP DNA Mini kit | Analytik Jena | PL + CL/ SB |
| MagJet Genomic DNA kit | Thermo Scientific | PL + CL/ MP |
| MasterPure Complete DNA & RNA Purification kit | Lucigen | PL + CL/ SP |
| nexttec 1-step DNA isolation kit for Bacteria | Biozym | PL + CL/ SB |
| NucleoSpin Microbial DNA Mini kit | Machery & Nagel | BB/ SB |
| PureLink Microbiome DNA Purification kit | Thermo Scientific | BB/ SB |
| QIAamp Cador pathogen Mini kit | Qiagen | PL + CL/ SB |
| QIAamp DNA Mini kit | Qiagen | PL + CL/ SB |
| QIAamp UCP Pathogen Mini kit | Qiagen | BB/ SB |
| QIAmp DNA Microbiome kit | Qiagen | BB/ SB |
| RTP Bacteria DNA Mini kit | Stratec Molecular | PL + CL/ SB |
| smart DNA prep | Analytik Jena | CL/ MP |
| Wizard Genomic DNA Purification kit | Promega | PL + CL/ SP |
* PL physical lysis; CL chemical lysis; BB bead-beating; MP magnetic particle based technology; SB silica based technology; SP salt precipitation.