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. 2020 Jun 9;20:266. doi: 10.1186/s12870-020-02412-5

Table 2.

Amino acid composition of NtAQPs at known functionally important positions

Gene Name NPA I NPA II ar/R Froger's positions Other regulatory residues Pred. subcellular loc.
LB LE H2 LC H5 LE1 LE2 P1 P2 P3 P4 P5 Asp28 Glu31 Ser115 Ser188 His193 Ser274 Ser277 mPLoc WolfPsort Yloc
PIP NtPIP1;1s NPA NPA F G H T R M S A F W E E SP N H - S plas plas cyto
NtPIP1;1t NPA NPA F G H T R M S A F W E E SP N H - S plas plas cyto
NtPIP1;2s NPA NPA F G H T R Q S A F W E E SP N H - S plas plas cyto
NtPIP1;2t NPA NPA F G H T R Q S A F W E E SP N H - S plas plas cyto
NtPIP1;3s NPA NPA F G H T R M S A F W E E SP N H - S plas plas cyto
NtPIP1;3t NPA NPA F G H T R M S A F W E E SP N H - S plas plas cyto
NtPIP1;5s NPA NPA F G H T R M S A F W E E SP N H - S plas plas cyto
NtPIP1;5t NPA NPA F G H T R M S A F W E E SP N H - S plas plas cyto
NtPIP1;7t NPA NPA F G H T R G S A F W E E SP SP H - S plas plas cyto
NtPIP1;8s NPA NPA F G H T R G S A F W E E SP SP H - S plas plas plas
NtPIP2;1s NPA NPA F G H T R Q S A F W D E SP N H SP S plas plas plas
NtPIP2;1x NPA NPA F G H T R Q S A F W D E SP N H SP S plas plas plas
NtPIP2;2t NPA NPA F G H T R Q S A F W D E SP N H SP S plas plas plas
NtPIP2;3t NPA NPA F G H T R Q S A F W D E SP N H SP S plas plas plas
NtPIP2;4s NPA NPA F G H T R Q S A F W D E SP N H SP S plas plas plas
NtPIP2;4t NPA NPA F G H T R Q S A F W D E SP N H SP S plas plas plas
NtPIP2;5s NPA NPA F G H T R Q S A F W D E SP N H SP S plas plas plas
NtPIP2;5t NPA NPA F G H T R Q S A F W D E SP N H SP S plas plas plas
NtPIP2;6s NPA NPA F G H T R Q S A F W D E SP SP H SP S plas plas plas
NtPIP2;6t NPA NPA F G H T R Q S A F W D E SP SP H SP S plas plas plas
NtPIP2;7t NPA NPA F G H T R Q S A F W D E SP SP H SP S plas plas plas
NtPIP2;8s NPA NPA F G H T R M S A F W D E S SP H SP S plas plas plas
NtPIP2;8t NPA NPA F G H T R M S A F W D E S SP H SP S plas plas plas
NtPIP2;9s NPA NPA F G H T R M S A F W D E SP SP H SP S plas plas plas
NtPIP2;9t NPA NPA F G H T R M S A F W D E SP SP H SP S plas plas plas
NtPIP2;11s NPA NPA F G H T R M S A F W D E SP N H SP S plas plas plas
NtPIP2;11t NPA NPA F G H T R M S A F W D E SP N H SP S plas plas plas
NtPIP2;13s NPA NPA F G H T R Q S A F W D E SP N H SP SP plas plas plas
NtPIP2;13t NPA NPA F G H T R Q S A F W D E SP N H SP SP plas plas plas
NIP NtNIP1;1s NPS NPA W A V A R F S A Y L - - P - - SP - plas plas cyto
NtNIP1;2s NPA NPA W L V A R F S A Y M - - P - - S - plas plas plas
NtNIP1;2t NPA NPA W L V A R F S A Y M - - P - - S - plas plas plas
NtNIP2;1s NPA NPA G T S G R L T A Y I - - P - - SP - plas plas plas
NtNIP3;1s NPA NPA W V I A R F S A Y I - - P - - S - plas plas plas
NtNIP4;1s NPA NPA W F V A R F S A Y I - - P - - S - plas plas plas
NtNIP4;1t NPA NPA W F V A R F S A Y I - - P - - S - plas plas plas
NtNIP4;2s NPA NPA W F V A R L S A Y I - - P - - T - plas plas plas
NtNIP4;2t NPA NPA W F V A R L S A Y I - - P - - T - plas plas plas
NtNIP4;3s NPA NPA W F V A R L S A Y I - - SP - - S - plas tono plas
NtNIP5;1s NPA NPA S V I A R F T A Y I - - P - - S - plas tono cyto
NtNIP5;1t NPS NPV A V I A R F T A Y L - - P - - S - plas tono cyto
NtNIP6;1s NPA NPV S V I A R L T A Y L - - P - - S - plas plas plas
NtNIP6;1t NPA NPV T V I A R L T A Y L - - P - - S - plas plas plas
NtNIP7;1s NPA NPA A I V G R Y S A Y V - - P - - T - plas plas plas
NtNIP7;1t NPA NPA A I V G R Y S A Y V - - P - - T - plas plas plas
TIP NtTIP1;1s NPA NPA H F I A V A S A Y W - - T - - - - tono plas plas
NtTIP1;1t NPA NPA H F I A V A S A Y W - - T - - - - tono plas plas
NtTIP1;2s NPA NPA H F I A V A S A Y W - - T - - - - tono plas pero
NtTIP1;2t NPA NPA H F I A V A S A Y W - - T - - - - tono plas pero
NtTIP1;3s NPA NPA H F I A V T S A Y W - - T - - - - tono plas plas
NtTIP1;3t NPA NPA H F I A V T S A Y W - - T - - - - tono plas plas
NtTIP1;4t NPA NPA H F I A V A S A Y W - - T - - - - tono plas cyto
NtTIP2;1s NPD NPA H H I G R V S A Y W - - T - - - - tono tono plas
NtTIP2;1t NPA NPA H H I G R V S A Y W - - T - - - - tono plas plas
NtTIP2;2s NPA NPA H H I G R V S A Y W - - T - - - - tono tono plas
NtTIP2;3s NPA NPA H H I G R V S A Y W - - T - - - - tono tono Extra
NtTIP2;3t NPA NPA H H I G R V S A Y W - - T - - - - tono tono plas
NtTIP2;4s NPA NPA H H I G R V S A Y W - - T - - - - tono plas plas
NtTIP2;5s NPA NPA H H I G R V S A Y W - - T - - - - tono plas plas
NtTIP2;5t NPA NPA H H I G R V S A Y W - - T - - - - tono plas plas
NtTIP3;1s NPA NPA H F I A R A A A Y W - - SP - - - - tono plas plas
NtTIP3;1t NPA NPA H F I A R A A A Y W - - SP - - - - tono plas plas
NtTIP3;2t NPA NPA H F V G R A A A Y W - - SP - - - - tono plas plas
NtTIP4;1s NPA NPA H H I A R V S A Y W - - T - - - - tono tono plas
NtTIP4;1t NPA NPA H H I A R L S A Y W - - T - - - - tono tono plas
NtTIP5;1s NPA NPA N H V G Y T S A Y W - - S - - - - tono plas plas
NtTIP5;1t NPA NPA N H V G Y T S A Y W - - S - - - - plas, vac plas plas
SIP NtSIP1;1t NPT NPA T E V P N M A A Y W - - H - - - - plas plas Extra
NtSIP1;2s NPA NPA T G V P N I A A Y W - - T - - - - plas tono Extra
NtSIP1;2t NPA NPA T G V P N I A A Y W - - T - - - - plas tono ER
NtSIP2;1s NPL NPA H R H G S F V A Y W - - S - - - - plas chlo Extra
NtSIP2;1t NPL NPA H R H G S F V A Y W - - S - - - - plas chlo Extra
XIP NtXIP1;6t NPV NPA A - T A R V C A F W - - S - - - - plas plas plas
NtXIP1;6s NPV NPA A - T A R V C A F W - - S - - - - plas plas plas
NtXIP1;7s NPV NPA I - T A R V C A F W - - S - - - - plas plas pero
NtXIP1;7t NPV NPA I - T A R V C A F W - - S - - - - plas plas pero

Amino acid composition of NtAQPs at known functionally important positions. Listed are the two NPA motifs (NPA I in Loop B, NPA II in Loop E), ar/R residues (in Helix 2, 5, Loop C and Loop E) and the Froger’s residues (Positions 1-5). Other known regulatory residues involved with post-translational regulation of AQPs are listed: Asp28, Glu31, Ser115, His131, His193, Ser274, Ser277. Amino acid positions of these sites are relative to Spinach PIP2;1 or Arabidposis TIP2;1 (LC - His131 residue), as their crystal structures have been defined and well-studied. Serine (S) residues with a superscript P (i.e. SP) are predicted to be phosphorylated according to NetPhos3.1. Also included are the predicted subcellular localisations from Plant-mPloc, WolfPsort and YLoc; outputs include plasma membrane (plas), cytosol (cyto), tonoplast (tono), chloroplast (chlo), endoplasmic reticulum (ER), peroxisome (pero) and extracellular (extra) localisation