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. 2020 May 13;5:100035. doi: 10.1016/j.gene.2020.100035

Table 6.

Grid search space for the tuning of the CNN and NN hyperparameters.

CNN model hyperparameters Search space
Activation function [tanh, relu]
Number of neurons on FC layer [128, 250, 512, 1024]
Initialization mode [uniform, glorot_normal]
Batch size [16, 32, 64, 128]
Dropout rate [0.01, 0.1, 0.2, 0.3, 0.4, 0.5]
Optimizer [SGD, Adam, Nadam]
4 × L embedding Number of filters [16, 32, 64]
Filter length [1, 2, 3, 4, 5, 6, 7, 8, 9]
Filter width [4]
64 × L embedding Number of filters [16, 32, 64]
Filter length [3, 5, 10, 21, 31, 41, 50, 61]
Filter width [64]



NN model hyperparameters Search space
Size of nodes [1,2,3,4,5]
Activation function [tanh, relu]
Solver [‘lbfgs’, ‘sgd’, ‘adam’]