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. 2020 Jun 11;11:60. doi: 10.1186/s40104-020-00459-w

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 5 — Beta-diversity of lumen bacterial communities between different microbiota input groups within the (a) jejunum, (b) ileum, and (c) cecum for both T1 and T2 and weeks 1, 3, and 6. Ellipses were generated around points to aid in visualizing group differences assuming a multivariate T-distribution with a 95% confidence interval. Population level PERMANOVA statistics (F.models and q-values) were also assessed between microbiota input groups within the same trial and between trials within the same input group for the (d) jejunum, (e) ileum, and (f) cecum