Table 1. Summary of 25 example subcellular locations extracted by GOcats.
| Subgraph name | User-input keywords | Predicted representative term (ID) | Nodes seeded from keyword search | Nodes added during graph extension | Seeded nodes not in subgraph | Total nodes |
|---|---|---|---|---|---|---|
| Aggresome | aggresome, aggresomal, aggresomes | aggresome (GO:0016235) | 1 | 0 | 0 | 1 |
| Bacterial | bacterial, bacteria, bacterial-type | bacterial-type flagellum (GO:0009288) | 136 | 1 | 121 | 16 |
| Cell Junction | junction | Cell junction (GO:0030054) | 68 | 16 | 34 | 50 |
| Chromosome | chromosome, chromosomal, chromosomes | chromosome (GO:0005694) | 120 | 122 | 31 | 211 |
| Cytoplasm | cytoplasm, cytoplasmic | Cytoplasm (GO:0005737) | 296 | 1061 | 160 | 1197 |
| Cytoplasmic Granule | granule, granules | secretory granule (GO:0030141) | 81 | 16 | 50 | 47 |
| Cytoskeleton | cytoskeleton, cytoskeletal | cytoskeleton (GO:0005856) | 78 | 194 | 47 | 225 |
| Cytosol | cytosol, cytosolic | cytosol (GO:0005829) | 56 | 51 | 28 | 79 |
| Endoplasmic Reticulum | endoplasmic, sarcoplasmic, reticulum | endoplasmic reticulum (GO:0005783) | 113 | 39 | 51 | 101 |
| Endosome | endosome, endosomes, endosomal | endosome (GO:0005768) | 67 | 15 | 24 | 58 |
| Extracellular | extracellular, secreted | extracellular region (GO:0005576) | 142 | 123 | 85 | 180 |
| Golgi Apparatus | golgi | golgi apparatus (GO:0005794) | 67 | 12 | 25 | 54 |
| Lysosome | lysosome, lysosomal, lysosomes | lysosome (GO:0005764) | 42 | 7 | 16 | 33 |
| Macromolecular Complex | protein, macromolecular | macromolecular complex (GO:0032991) | 1317 | 969 | 184 | 2102 |
| Microbody | microbody, microbodies | microbody (GO:0042579) | 4 | 20 | 0 | 24 |
| Mitochondrion | mitochondria, mitochondrial, mitochondrion | mitochondrion (GO:0005739) | 134 | 2 | 44 | 92 |
| Neuron Part | neuron, neuronal, neurons, synapse | neuron part (GO:0097458) | 90 | 94 | 35 | 149 |
| Nucleolus | nucleolus, nucleolar | nucleolus (GO:0005730) | 25 | 11 | 12 | 24 |
| Nucleus | nucleus, nuclei, nuclear | nucleus (GO:0005634) | 288 | 340 | 118 | 510 |
| Other Organism | other, host, organism | other organism (GO:0044215) | 369 | 12 | 259 | 122 |
| Plasma Membrane | plasma | plasma membrane (GO:0005886) | 308 | 302 | 164 | 446 |
| Plastid | plastid, chloroplast | plastid (GO:0009536) | 95 | 48 | 8 | 135 |
| Thylakoid | thylakoid, thylakoids | thylakoid (GO:0009579) | 52 | 22 | 11 | 63 |
| Vesicle | vesicle, vesicles | vesicle (GO:0031982) | 198 | 90 | 85 | 203 |
| Viral | virion, virus, viral | viral occlusion body (GO:0039679) | 93 | 1 | 26 | 68 |
| Expected representative | ||||||
| Unexpected representative |
aNodes seeded from keyword search.
bNodes added through subgraph extension.
cSeeded nodes removed due to subgraph omission.
dBecause subgraph nodes may root to more than one representative root node, the totals in this table do not add up to the total number of GO terms in Cellular Component.