Table 3. Agreement summary between corresponding GOcats and Map2Slim subgraphs.

Location Category	Term ID	Inclusion Index‡	Jaccard Index	GOcats subgraph size	Map2Slim subgraph size	"Has_part" relationships
Aggresome	GO:0016235	1	1	1	1	0
Bacterial-type Flagellum	GO:0009288	1	1	16	16	8
Cell Junction	GO:0030054	0.980392	0.980392	50	51	4
Chromosome	GO:0005694	0.984375	0.883178	211	192	40
Cytoplasm	GO:0005737	0.927273	0.452055	1197	605	38
Cytoskeleton	GO:0005856	0.812274	0.812274	225	277	10
Cytosol	GO:0005829	0.963415	0.963415	79	82	8
Endoplasmic Reticulum	GO:0005783	1	0.990099	101	100	4
Endosome	GO:0005768	1	1	58	58	0
Extracellular Region	GO:0005576	1	0.927778	180	167	2
Golgi Apparatus	GO:0005794	1	1	54	54	0
Lysosome	GO:0005764	1	1	33	33	0
Macromolecular Complex	GO:0032991	0.947274	0.947274	2102	2219	232
Microbody	GO:0042579	1	1	2	24	0
Mitochondrion	GO:0005739	0.978723	0.978723	92	94	8
Neuron Part	GO:0097458	1	0.993289	149	148	22
Nucleolus	GO:0005730	0.857143	0.857143	24	28	0
Nucleus	GO:0005634	0.991684	0.928016	510	481	168
Other Organism	GO:0044215	1	1	122	122	8
Plasma Membrane	GO:0005886	0.563081	0.547097	446	753	20
Plastid	GO:0009536	0.992647	0.992647	135	136	0
Secretory Granule	GO:0030141	1	1	47	47	0
Thylakoid	GO:0009579	1	1	63	63	0
Vesicle	GO:0031982	0.981132	0.757282	203	159	12
Viral Occlusion Body	GO:0039679	1	0.0147059	68	1	4

^‡ Inclusion index quantifies the extent to which the smaller subgraph is included in the larger subgraph