Table 4. Summary of 20 subcellular locations used in the HPA raw experimental data extracted by GOcats.
| Subgraph name | User-input keywords | Predicted representative term (ID) | Nodes seeded from keyword search | Nodes added during graph extension | Seeded nodes not in subgrapha | Total nodesb |
|---|---|---|---|---|---|---|
| Actin cytoskeleton | actin cytoskeleton | actin cytoskeleton (GO:0015629) | 117 | 22 | 77 | 62 |
| Aggresome | aggresome, aggresomal, aggresomes | aggresome (GO:0016235) | 1 | 0 | 0 | 1 |
| Cell Junction | junction | cell junction (GO:0030054) | 68 | 16 | 34 | 50 |
| Centrosome | centrosome | centrosome (GO:0005813) | 10 | 2 | 5 | 7 |
| Cytoplasm | cytoplasm, cytoplasmic | cytoplasm (GO:0005737) | 296 | 1061 | 160 | 1197 |
| Endoplasmic Reticulum | endoplasmic, sarcoplasmic, reticulum | endoplasmic reticulum (GO:0005783) | 113 | 39 | 51 | 101 |
| Focal adhesion | focal adhesion | focal adhesion (GO:0005925) | 29 | 0 | 28 | 1 |
| Golgi Apparatus | golgi | golgi apparatus (GO:0005794) | 67 | 12 | 25 | 54 |
| Intercellular bridge | intercellular bridge | intercellular bridge (GO:0045171) | 24 | 2 | 19 | 7 |
| Intermediate filament cytoskeleton | intermediate filament cytoskeleton | intermediate filament cytoskeleton (GO:0045111) | 126 | 0 | 118 | 8 |
| Intracellular membrane-bounded organelle (vesiclec) | intracellular membrane-bounded organelle | Intracellular membrane-bounded organelle (GO:0043231) | 229 | 1116 | 118 | 1227 |
| Microtubule cytoskeleton | microtubule cytoskeleton | microtubule cytoskeleton (GO:0015630) | 112 | 55 | 68 | 109 |
| Microtubule end | microtubule end | microtubule end (GO:1990752) | 138 | 0 | 133 | 5 |
| Microtubule organizing center | microtubule organizing center | microtubule organizing center (GO:0005815) | 110 | 34 | 95 | 49 |
| Mitochondrion | mitochondria, mitochondrial, mitochondrion | mitochondrion (GO:0005739) | 134 | 2 | 44 | 92 |
| Nuclear membrane | nuclear membrane | nuclear membrane (GO:0031965) | 1151 | 0 | 1139 | 12 |
| Nucleolus | nucleolus, nucleolar | nucleolus (GO:0005730) | 25 | 11 | 12 | 24 |
| Nucleoplasm | nucleoplasm | nucleoplasm (GO:0005654) | 10 | 125 | 4 | 131 |
| Nucleus | nucleus, nuclei, nuclear | nucleus (GO:0005634) | 288 | 340 | 118 | 510 |
| Plasma Membrane | plasma | plasma membrane (GO:0005886) | 308 | 302 | 164 | 446 |
| Expected representative | ||||||
| Unexpected representative |
aSeeded nodes removed due to subgraph omission.
bBecause subgraph nodes may root to more than one representative root node, the totals in this table do not add up to the total number of GO terms in Cellular Component.
cHPA conservatively annotates "vesicles" as intracellular membrane-bounded organelle.