Table 5. Generic location categories used to resolve potential scoping inconsistencies in HPA raw data.
HPA annotation category | GOcats-customized general HPA category |
---|---|
Actin cytoskeleton | Cytoskeleton |
Centrosome | |
Intermediate filament cytoskeleton | |
Microtubule cytoskeleton | |
Microtubule end | |
Microtubule organizing center | |
Aggresome | Aggresome |
Cell junction | Cell junction |
Cytoplasm | Cytoplasm |
Endoplasmic reticulum | Endoplasmic reticulum |
Focal adhesion | Focal adhesion |
Golgi apparatus | Golgi apparatus |
Intercellular bridge | intercellular bridge |
intracellular membrane-bounded organelle | intracellular membrane-bounded organelle |
Mitochondrion | Mitochondrion |
Nucleus | Nucleus |
Nucleoplasm | |
Nuclear membrane | |
Nucleolus | Nucleolus |
Plasma membrane | Plasma membrane |