Table 6. Summary of gene location category agreement between manually-curated HPA raw data and GOcats/Map2Slim categorized HPA-derived annotations.
| Agreement* | |||||
|---|---|---|---|---|---|
| Location | Complete | Partial | Superset‡ | None | Not in Knowledgebase |
| Actin cytoskeleton | 51 | 0 | 7 | 0 | 37 |
| Aggresome | 2 | 0 | 0 | 3 | 4 |
| Cell Junction | 36 | 0 | 17 | 0 | 51 |
| Centrosome | 58 | 3 | 17 | 0 | 49 |
| Cytoplasm | 1037 | 55 | 162 | 5 | 643 |
| Endoplasmic Reticulum | 66 | 1 | 7 | 0 | 39 |
| Focal adhesion | 27 | 5 | 9 | 0 | 17 |
| Golgi Apparatus | 159 | 5 | 43 | 0 | 137 |
| Intercellular bridge | 14 | 0 | 4 | 0 | 19 |
| Intermediate filament cytoskeleton | 18 | 1 | 4 | 0 | 23 |
| Intracellular membrane-bounded organelle | 283 | 6 | 50 | 1 | 212 |
| Microtubule cytoskeleton | 35 | 2 | 9 | 0 | 27 |
| Microtubule end | 2 | 0 | 0 | 0 | 0 |
| Microtubule organizing center | 32 | 0 | 5 | 0 | 14 |
| Mitochondrion | 263 | 4 | 55 | 0 | 154 |
| Nuclear membrane | 47 | 6 | 17 | 0 | 39 |
| Nucleolus | 266 | 10 | 69 | 6 | 163 |
| Nucleoplasm | 989 | 26 | 230 | 23 | 534 |
| Nucleus | 437 | 14 | 217 | 23 | 373 |
| Plasma Membrane | 265 | 12 | 55 | 0 | 225 |
‡Knowledgebase genes mapped to a set of categories that is a superset of those manually assigned by the HPA in raw data
*Numbers reflect how many times a location was involved in a particular agreement type; sums of all locations for an agreement category do not indicate the total number of genes for an agreement type.