Table 1.
Data filter statistics and mapping rate.
| Sample name | Raw reads number | Raw bases | Clean reads number | Clean bases | Clean rate (%) | Q30 (%) | Total reads | Mapped reads | Uniquely mapped reads | Multiple mapped reads |
|---|---|---|---|---|---|---|---|---|---|---|
| C1 | 107976268 | 16196440200 | 105843120 | 15847150908 | 97.84 | 95.74 | 105843120 (100.00%) | 829724877 (78.39%) | 78371374 (94.45%) | 4601113 (5.55%) |
| C2 | 102655950 | 15398392500 | 100535076 | 15051874722 | 97.75 | 95.68 | 100535076 (100.00%) | 76775043 (76.37%) | 72768941 (94.78%) | 4006102 (5.22%) |
| C3 | 94191664 | 14128749600 | 92065762 | 13785172696 | 97.57 | 95.5 | 92065762 (100.00%) | 66297518 (72.01%) | 62685998 (94.55% | 3611520 (5.45%) |
| M1 | 107352654 | 16102898100 | 105336702 | 15773218776 | 97.95 | 95.9 | 105336702 (100.00%) | 81907897 (77.76%) | 78242379 (95.52%) | 3665518 (4.48%) |
| M2 | 107094318 | 16064147700 | 104743846 | 15677865434 | 97.6 | 95.66 | 104743846 (100.00%) | 80056882 (76.43%) | 75651498 (94.50%) | 4405384 (5.50%) |
| M3 | 106770634 | 16015595100 | 104407040 | 15633725952 | 97.62 | 95.63 | 104407040 (100.00%) | 74612317 (71.46%) | 71599459 (95.96%) | 3012858 (4.04%) |