Table 1.
Summarised details of MinION sequencing of EE and RICE transformants.
EE_ GmV-97 | RICE_GmV-41_A | RICE_GmV-41_B | RICE_GmV-47_A | RICE_GmV-47_B | |
---|---|---|---|---|---|
Nucleotides (total) | 203,640,859 | 254,953,905 | 279,294,842 | 257,611,430 | 325,110,058 |
Reads (total) | 26,455 | 37,373 | 31,581 | 18,525 | 20,153 |
Average read length | 7,697.63 | 6,822 | 8,843.60 | 13,906 | 16,132.09 |
Coverage estimated | ~5.8x | ~ 7.2x | ~7.9x | ~ 7.3x | ~9.2x |
Total reads aligning to RICE plasmid | 26 | 248 | 210 | 157 | 151 |
Reads aligning to RICE plasmid and genome on both borders | 0 | 1 | 0 | 0 | 0 |
Reads aligning to RICE plasmid and genome on either border | 0 | 18 | 14 | 19 | 27 |
Reads aligning to RICE plasmid only | 26 | 230 | 196 | 138 | 124 |
For RICE_GmV cell lines, the analysis was performed on two biological replicates (A and B).