Table 2.
Summarised details of integration events of EE and RICE transformants.
| Clone | Insertion site ID | Estimated chromosomal location (bp) | In silico assembly of island complete? | Size island (Kbp) | Genetic feature at integration site | Putative annotation of feature at integration site | AA size | Upstream features within 1 Kbp | Downstream features within 1 Kbp |
|---|---|---|---|---|---|---|---|---|---|
| EE_GmV-97 | None | NA | |||||||
| RICE_GmV-41 | 41-1 | ch1: 2,477,260 | Incomplete. | >43 | Intergenic | None | NA | Phatr3_J8770 (protein coding) | Phatr3_J54066 (protein coding) |
| 41-11 | ch11: 316,959–317,016 | Complete. (Single read spanned island). | ~10 | Intergenic | None | NA | Phatr3_J46733 (protein coding) | Phatr3_EG00809 (protein coding) | |
| RICE_GmV-47 | 47-9 | ch9: 865,083–865,119 | Incomplete. | >124 | Phatr3_J46300 (single exon protein coding gene). | CM000612 Genomic DNA Translation: EEC47937.1 | 402 aa | NA | Phatr3_J46301 (protein coding) |
| 47-10 | ch10: 609,260–609,276 | Incomplete. | >87 | Phatr3_J46528 (single exon protein coding gene). | CM000613 Genomic DNA Translation: EEC47687.1 | 429 aa | NA | NA | |
NA, Not applicable.