Table 2.
Tembusu virus strains used for phylogenetic analysis in this study.
| TMUV /DTMUV Strains |
Host | Location | Year/ Month |
GenBank Accession Number /ORF Sequence Identity (%)/ Length (Nucleotides) |
GenBank Accession Number /Protein Sequence Identity (%)/ Length (Amino Acids) |
|---|---|---|---|---|---|
| TP1906 | Cx. annulus | Taipei/ Taiwan |
2019/ Jun |
MN747003 100 (10,990) |
100 (3425) |
| TC1906 † | Cx. tritaeniorhynchus | Taichung/ Taiwan |
2019/ Jun |
MN958524 NS1:99.79 (964) |
NS1:99.69 (964) |
| Sitiawan virus | Broiler Chicks | Perak state/ Malaysia |
2000 |
JX477686 93.71 (10,278) |
AFP95929 98.92 (3425) |
| MM1775 | Cx. tritaeniorhynchus | Kuala Lumpar/ Malaysia |
1955 |
JX477685 91.27 (10,278) |
AFP95928 98.57 (3425) |
| YY5 | Duck | Zhejiang Province/ China |
2010 |
JF270480 87.05 (10,990) |
AEX15510 96.50 (3425) |
| BYD-1 | Duck | China | 2010 |
JF312912 87.15 (10,278) |
AEA72437 96.55 (3425) |
| JS804 | Goose | Jiangsu Province/ China |
2010 |
JF895923 87.12 (10,990) |
AEJ87340 96.38 (3425) |
| CK-SD-11 | Chicken | China | 2010 |
JQ627862 87.01 (10,278) |
AFP19891 96.41 (3425) |
| GX_2011 | Duck | Guangxi Province/ China |
2011 |
KC990542 87.05 (10,990) |
AGV52066 96.47 (3425) |
| FS-2011 | Duck | China | 2011 |
KX686578 87.00 (10,991) |
AOS50837 96.44 (3425) |
| df-2 | Duck | China | 2012 |
KJ489355 87.16 (10,990) |
AHY19030 96.53 (3425) |
| byd1 | Duck | Hebei Province/ China |
2012 |
JQ920420 87.15 (10,990) |
AFN43039 96.55 (3425) |
| JSGo | Goose | China | 2012 |
AB917090 87.21 (10,959) |
BAQ19608 96.53 (3425) |
| DEDSV strain pigeon | Pigeon | Beijing Autonomous City/ China | 2012 |
JQ920425 87.09 (10,990) |
AFN43044 96.61 (3425) |
| AHQY | Layer Duck | China | 2013 |
KJ740748 86.65 (10,990) |
AIF73122 96.35 (3425) |
| SX1 | Chicken | China | 2013 |
KM066945 86.80 (10,990) |
AIR72260 95.97 (3425) |
| G23 | Goose | China | 2014 |
KT239021 86.92 (10,881) |
AKR79508 96.61 (3425) |
| JS06 | Chicken | China | 2014 |
KR869106 86.69 (10,990) |
ALL27018 95.7 (3425) |
| GD2014 | Duck | China | 2014 |
KU323595 87.06 (10,990) |
ANF99570 96.50 (3425) |
| DTMUV/CH/2014 | Duck | China | 2014 |
KP096415 87.05 (10,990) |
AKO73664 96.44 (3425) |
| GDLH01 | Duck | China | 2015 |
KT824876 87.07 (10,990) |
ALM89034 96.47 (3425) |
| SH001 | Duck | Shanghai Province /China | 2015 |
KP742476 87.10 (10,990) |
AJR29358 96.50 (3425) |
| HZ4-2015 | Broiler Duck | China | 2015 |
KX686571 86.63 (10,991) |
AOS50830 95.94 (3425) |
| SD14 | Anas platyrhynchos | China | 2014 |
MH748542 88.00 (11,001) |
AXY93835 96.64 (3425) |
| DK/TH/CU-DTMUV | Duck | Thailand | 2007 |
MF621927 87.21 (10,278) |
AVM38076 96.41 (3425) |
| D1977/1/MY | Pekin Duck | Malaysia | 2012 |
KX097989 87.09 (10,988) |
ANK79132 96.20 (3424) |
| D1921/1/3/MY | Pekin Duck | Malaysia | 2012 |
KX097990 87.10 (10,988) |
ANK79133 96.18 (3424) |
| DK/TH/CU-1 | Duck | Thailand | 2013 |
KR061333 86.91 (10,278) |
ALE71321 96.55 (3425) |
| KPS54A61 | Duck | Thailand | 2013 |
KF573582 86.84 (10,990) |
AIK27529 96.35 (3425) |
| GX2013E | Duck | China | 2013 |
KM275940 86.97 (10,990) |
AIX09854 96.23 (3425) |
| HD-2015 | Layer Duck | China | 2015 |
KX686572 86.75 (10,991) |
AOS50831 96.15 (3425) |
| HZ1-2015 | Layer Duck | China | 2015 |
KX686570 86.52 (10,990) |
AOS50829 96.12 (3425) |
| HZ3-2015 | Duck | China | 2015 |
KX686579 86.94 (10,992) |
AOS50838 96.18 (3425) |
| zjYY150901 | Duck | China | 2015 |
MF522174 86.82 (10,990) |
AWX59350 96.29 (3425) |
| SDMS | Culex Mosquito | Shangdong Province/China | 2012 |
KC333867 87.04 (10,990) |
AGR42654 96.47 (3425) |
| SDXT | Layer Duck | China | 2013 |
KJ740745 87.08 (10,990) |
AIF73119 96.58 (3425) |
| JS-L1 | Duck | China | 2015 |
KY626659 87.14 (10,890) |
ARA71333 96.53 (3425) |
† The sequence identity of TC1906 partial NS5 (156 nt) and NS1 (964 nt) was 100% and 99.79% with TP1906, respectively.