Table 1.

Numbers of mtDNA variants detected in pairwise comparisons of HT-29 cells according to the following thresholds: depth of 30 reads and minimum allele frequency of 3%.

Protocol	All	Common	Hom	Het	%Common	Unique	Confirmed	%Confirmed
DOP	41	37	31	6	90.24	4	33	89.19
eWGA	44	40	37	3	90.91	4	36	90
MALBAC	3	3	2	1	100	0	2	66.67
MDA	43	38	36	2	87.37	5	36	94.74

Protocol: amplification protocol; All: all variants detected in each pair; Common: number of variants shared by each pair; Hom: number of homoplasmic variants; Het: number of heteroplasmic variants; %Common: percentage of variants shared by each pair; Unique: number of private variants; Confirmed: number of variants confirmed by the bulk; %Confirmed: percentage of variants confirmed by the bulk.