Gene networks with transcriptional bursting recapitulate rare transient coordinated high expression states in cancer

. Author manuscript; available in PMC: 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22;10(4):363–378.e12. doi: 10.1016/j.cels.2020.03.004

KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited Data
RNA-FISH data – marker genes	Shaffer et al., 2017	https://www.dropbox.com/sh/g9c84n2torx7nuk/AABZei_vVpcfTUNL7buAp8z-a?dl=0
RNA-FISH data – network inference (resistant colonies)	Shaffer et al., 2017	https://www.dropbox.com/sh/g9c84n2torx7nuk/AABZei_vVpcfTUNL7buAp8z-a?dl=0
Data – Model simulations	This paper	https://www.dropbox.com/sh/n94q45zkn5w54fe/AACC3cgts4kD6MWEE452pEgEa?dl=0
Software and Algorithms
MATLAB R2017a and R2018a	Mathworks	https://www.mathworks.com
Phixer	Singh et al., 2018	https://github.com/nitinksingh/phixer/
Code – Model simulations	This paper	https://doi.org/10.5281/zenodo.3713697