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. 2020 Jun 12;10:9532. doi: 10.1038/s41598-020-66252-x

Table 1.

Detailed information on V and W proteins of APMV species and strains analyzed in this study.

S.No APMV species Genbank Id Year of Isolation Place of isolation Isolated from P ORF (Nt) /P Protein length (aa) P gene ‘RNA editing site’ sequence (numbers indicate the position of nucleotide in the genome, editing site is bolded and hexamer phase of the start of the short C run in edit site is underlined) Subunit hexamer phasing at the P gene mRNA editing site V ORF (Nt) /V Protein length (aa) W ORF (Nt) /W Protein length (aa) No. of unique amino acids in the C terminal region of W protein
1 APMV -1 (NDV) Velo-genic KJ808820.1 2012 China Pigeon 1188 /395 2283CGAU UUUUCC CCGG 5 720/239 684/227 94
2 FJ386394.2 2009 China Chicken 1188 /395 2277CGAU UUUUCC CGGG 5 720/239 666/221 88
3 GU187941.1 1987 India Chicken 1188/395 2277CGAU UUUUCC CGGG 5 720/239 531/196 62
4 JQ015296.1 2011 China Chicken 1188/395 2283CGAU UUUUCC CGGG 5 720/239 534/177 43
5 Meso-genic KX761866.1 2010 China Duck 1188/395 2277CGAU UUUUCC CGGG 5 720/239 684/227 94
6 KT445901.1 1945 Palestine Duck 1188/395 2277CGAU UUUUCC CGGG 5 720/239 666/221 88
7 AY562986.1 1993 USA Anhinga 1188/395 2283UGAU UUUUCC CGGG 5 720/239 540/179 45
8 KJ736742.1 1998 Germany Pigeon 1188/395 2283CGAU UUUUCC CCGG 5 720/239 414/137 3
9 Lento-genic KM885162.1 2013 China Duck 1200/399 2277CGAU UUUUCC CGGG 5 738/245 552/183 49
10 JN688862.1 2009 China Chicken 1200/399 2277CGAU UUUUCC CGGG 5 738/245 552/183 49
11 JX193078.1 2009 China Duck 1188/395 2277CGAU UUUUCC CGGG 5 720/239 540/179 45
12 AB524405.1 1991 Alaska Goose 1200/399 2277CGAU UUUUCC CGGG 5 738/245 552/183 49
13 APMV - 2 HM159993.1 2006 England Chicken 1200/399 2089CAAUUU UUCCCC UU 3 699/232 624/207 67
14 HQ896023.1 1999 China Gallus gallus 1200/399 2089CAAUUU UUCCCC UU 3 699/232 624/207 67
15 EU338414.1 1956 USA Chicken 1200/399 2089CAAUUU UUCCCC UU 3 699/232 624/207 67
16 HM159994.1 1980 Kenya Gadwell 1200/399 2089CAAUUU UUCCCC UU 3 699/232 624/207 67
17 HQ896024.1 2001 China Gallus gallus 1200/399 2089CAAUUU UUCCCC UU 3 699/232 624/207 67
18 APMV - 3 EU403085.1 1975 Netherland PKT 1161/386 2078AAAAA UUUCCC CCG 4 747/248 378/125 14
19 EU782025.1 1968 USA Turkey 1173/390 2083AAAAAU UUCCCC CG 3 759/252 384/127 12
20 APMV - 4 FJ177514.1 1975 China Duck 1182/393 2052G AAAAUU UCCCCC C 2 675/224 414/137 2
21 JX133079.1 2010 South Africa Alopochen aegyptiacus 1182/393 2052G AAAAUU UCCCCC C 2 675/224 414/137 2
22 APMV - 5 GU206351.1 1974 Japan Budgerigar 1341/446 2359AAUUUU UUCCCG GG 3 834/277 564/187 5
23 LC168750.1 1975 Japan Melopsitt-acus undulatus 1341/446 2357GU AAUUUU UUCCGG G 3 834/277 564/187 5
24 APMV - 6 JX522537.1 2011 China Anas poecilorhyn-cha 1293/430 2146AGU UUUUUC CCCUU 6 825/274 489/162 4
25 KP762799.1 2013 Kazakhstan Red-crested pochard 1293/430 2146AGU UUUUUC CCCUU 6 825/274 489/162 5
26 EU622637.2 1977 Hong Kong Duck 1293/430 2146AGU UUUUUC CCCUU 6 807/268 534/177 5
27 AY029299.1 1998 Taiwan Duck 1293/430 2146AGU UUUUUC CCCUU 6 807/268 534/177 20
28 KF267717.1 2011 China Anas poecilorhyncha 1293/430 2146AGU UUUUUC CCCUU 6 825/274 489/162 20
29 KT962980.1 2009 Russia Anas crecca 1293/430 2139AGUU UUUUCC CCUU 5 825/274 594/197 5
30 EF569970.1 2003 Russia Domestic goose 1293/430 2146AGU UUUUUC CCCUU 6 807/268 534/177 40
31 GQ406232.1 2007 Italy Duck 1293/430 2134AGU UUUUUC CCGCU 6 816/271 474/157 4
32 APMV - 7 FJ231524.1 1975 USA Dove 1185/394 2150AAUUU UUUCCC AAU 4 753/250 378/125 1
33 APMV - 8 FJ215863.2 1976 USA Canada goose 1218/405 2095UAAUUU UUCCCG GG 3 717/238 612/203 65
34 MF448515.1 2013 Kazakhstan Little stint 1218/405 2095UAAUUU UUCCCG GG 3 717/238 519/172 34
35 JX901129.1 1978 Japan Pintail duck 1218/405 2095UAAUUU UUCCCG GG 3 717/238 519/172 34
36 FJ619036.1 1976 USA Canada goose 1218/405 2095UAAUUU UUCCCG GG 3 717/238 519/172 34
37 MF448514.1 2013 Kazakhstan Whooper swan 1218/405 2095UAAUUU UUCCCG GG 3 717/238 519/172 34
38 APMV - 9 EU910942.1 1978 USA Domestic duck 1260/419 2319GAUU UUUUCC CGAG 5 792/263 585/194 56
39 APMV - 10 HM755886.2 2007 United Kingdom Penguin 1218/405 2094A GAAUUU UUCCCG UG 3 741/246 519/172 34
40 HM147142.3 2007 Falkland Islands Penguin 1218/405 2094A GAAUUU UUCCCG UG 3 741/246 519/172 34
41 HM755887.2 2007 United Kingdom penguin 1218/405 2094A GAAUUU UUCCCG UG 3 741/246 519/172 34
42 HM755888.2 2007 United Kingdom penguin 1218/405 2094A GAAUUU UUCCCG UG 3 741/246 519/172 34
43 APMV - 11 JQ886184.1 2010 France Common snipe 1344 /447(2 G insertion) 2333AA AAUUCU UCCCCC A 2 834/277 (V mRNA is the unedited transcript) 546/181(1 G insertion) 15
44 APMV - 12 KC333050.1 2005 Italy Wigeon 1218/405 2324UGAUU UUUUCC CUAG 5 762/253 564/187 31
45 APMV - 13 KU646513.1 2013 Kazakhstan Wild goose 1194/397 2318UGAUU UUUUCC CGUC 5 726/241 453/150 2
46 KX119151.2 2011 Ukraine White-fronted goose 1194/397 2318UGAUU UUUUCC CGUC 5 726/241 453/150 2
47 LC041132.1 2000 Japan Ansersp 1194/397 2318UGAUU UUUUCC CGUC 5 726/241 453/150 2
48 APMV - 14 KX258200.1 2011 Japan Duck 1227/408 2094A AAAUUU UCCCCG GC 2 759/252 471/156 12
49 APMV – 15 KX932454.2 2012 Brazil Calidrisfuscicollis 1248/415 2039AA UUUUUC CCCCCU G 6 759/252 438/145 2
50 APMV - 16 KY511044.1 2014 South Korea Wild duck 1200/399 2289UGAU UUUUUC CCAGU 6 738/245 423/140 5
51 APV-A (APMV – 17) KY452442.1 2014 Antarctica Pygoscelispapua 1209/402 2105AAUUUUUUCCCCAGU Hexamer phasing position not determined as their genome lengths did not conform to ‘rule of six’ 771/256 492/163 12
52 APV-B (APMV – 18) KY452443.1 2014 Antarctica Pygoscelispapua 1179/392 2116AAUUUUUUCCCCAGU 711/236 531/176 35
53 APV-C (APMV – 19) KY452444.1 2014 Antarctica Pygoscelispapua 1134/377 2153GAAUUUUUUCCCAGU 666/221 393/130 4
54 APMV - 20 MF033136.1 2014 Kazakhstan Gull 1296/431 2171AA AAUUUU CCCCCU C 1 792/263 498/165 17
55 APMV - 21 MF594598.1 2015 South Korea Wild birds 1320/439 2270CGAUU UUUUCC CGUC 5 915/304 432/143 3

A summary on the viruses analyzed in this study with specifications of their P, V and W protein sequences.

Nt: nucleotides, aa: amino acids.