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. 2020 May 7;124(23):4673–4685. doi: 10.1021/acs.jpcb.9b11802

Table 1. Kd, Bij, and the Contributions of Binding Interactions, Bij(b), and Nonbinding Interactions, Bij, to Bij for Three Protein Complexes (PDB codes 6LYZ, 1OTR, 1UUG) for the Insertion/Removal Method (“ins/rem”) and the Subvolume Method (“subvol”)a.

lysozyme method Kd [μM] B22 [nm3] B22(b) [nm3] B22(u) [nm3]
  ins/rem 5191 ± 63 –77 ± 4 –160 ± 2 83 ± 4
  subvol 5188 ± 68 –78 ± 4 –160 ± 2 82 ± 3
Ubi/CUE method Kd [μM] B23 [nm3] B23(b) [nm3] B23(u) [nm3]
  ins/rem 153 ± 1 –5444 ± 37 –5435 ± 37 –9 ± 3
  subvol 153 ± 1 –5455 ± 39 –5444 ± 38 –11 ± 3
UDG/Ugi method Kd [μM] B23 [nm3] B23(b) [nm3] B23(u)[nm3]
  ins/rem 0.25 ± 0.002 –3 332 000 ± 27 000 –3 332 000 ± 27 000 –94 ± 5
  subvol 0.25 ± 0.002 –3 308 000 ± 27 000 –3 308 000 ± 27 000 –81 ± 7
a

Errors are standard errors of the mean.