Table 3. The alternative and null model likelihood values for the twelve genes that show footprints of positive selection in the Holbrookia lineage.
| Gene | Alternative Log Likelihood | Null Log Likelihood | Unadjusted P-Values | Adjusted P-Values | BEB scores for positive sites |
|---|---|---|---|---|---|
| BNIP3L | -1236.0192 | -1245.697904 | 1.08E-05 | 7.70E-04 | N 0.996 |
| N 0.986 | |||||
| N 0.986 | |||||
| TBL2 | -3224.401186 | -3232.500738 | 5.70E-05 | 4.39E-03 | P 0.939 |
| Q 0.938 | |||||
| RP2 | -2022.830549 | -2036.859674 | 1.18E-07 | 9.09E-06 | G 0.975 |
| E 0.950 | |||||
| E 0.995 | |||||
| PHGDH | -3332.16336 | -3342.054215 | 8.68E-06 | 6.68E-04 | Q 0.980 |
| A 0.921 | |||||
| KRT18 | -2900.33107 | -2907.152926 | 0.00022098 | 1.69E-02 | G 0.947 |
| S 0.942 | |||||
| N 0.977 | |||||
| LURAP1 | -1161.470425 | -1170.150278 | 3.09E-05 | 2.38E-03 | P 0.861 |
| A 0.867 | |||||
| CDO1 | -1337.215619 | -1344.793392 | 9.90E-05 | 7.62E-03 | Q 0.925 |
| LBHD2 | -761.2579 | -788.429241 | 1.68E-13 | 1.29E-11 | Q 0.988 |
| I 0.999 | |||||
| C 0.999 | |||||
| V 0.999 | |||||
| D 0.999 | |||||
| A 0.993 | |||||
| C 0.994 | |||||
| T 0.999 | |||||
| GRSF1 | -2724.823688 | -2731.69004 | 0.000210753 | 1.62E-02 | T 0.914 |
| Q 0.970 | |||||
| SLC9A3R1 | -1661.883638 | -1669.365305 | 0.000109621 | 8.47E-03 | E 0.975 |
| RNF81 | -1070.037763 | -1079.230221 | 1.80E-05 | 1.54E-03 | P 0.972 |
| S 0.985 | |||||
| MPHOSPH6 | -1077.189311 | -1086.384783 | 1.80E-05 | 1.39E-03 | A 0.921 |
| R 0.953 | |||||
| P 0.951 |