Table 5.

Classification performance for T. aestivum. Results are averaged across three samples for each of diploid A. tauschii (D) and tetraploid Chinese Spring (AB). The percent mapped refers to the number of reads that was mappable and, in the case of subgenome classification, the number of reads mappable to any subgenome. The classification error refers to the proportion of classified reads which were assigned to the wrong subgenome. The number of expressed homeologs with more than one read in any sample is also shown for each subgenome as a percentage of the set of 21 196 homeologs

		Classification error		chrA	chrB	chrD
	Mapped, %	AB to D, %	D to AB, %	Homeologs, %	Homeologs, %	Homeologs, %
STAR	75.83	9.12	14.85	53.62	53.47	59.11
LAST	77.21	1.62	2.78	54.28	53.96	60.61
Kallisto	78.17	10.17	16.71	69.80	70.05	75.64
HomeoRoq	79.73	0.97%	1.54	48.24	48.20	53.43
EAGLE-RC	79.73	0.33	0.66	48.83	48.52	55.51