Table 2.
The living environments and the genome size of the individual genomes chosen for generating simulated reads
| Species name | Abbreviation | Major living environment | Genome size |
|---|---|---|---|
| Individual genomes chosen for being added in the SRR769529 dataset | |||
| Porphyromonas gingivali | P. gingivali | human oral cavity | 2 339 898 bp |
| Streptococcus salivarius | S. salivarius | human oral cavity and upper respiratory tract | 2 259 227 bp |
| Aggregatibacter actinomycetemcomitans | A. actinomycetemcomitans | human localized aggressive periodontitis | 2 382 853 bp |
| Rahnella aquatilis | R. aquatilis | fresh water | 4 861 101 bp |
| Methanococcus maripaludis | M. maripaludis | wetland | 1 661 137 bp |
| Individual genomes chosen for being added in the ERR2762185 dataset | |||
| Synechococcus elongatus | S. elongatus | ocean | 2 696 255 bp |
| Loktanella vestfoldensis | L. vestfoldensis | ocean | 3 836 950 bp |
| Saccharomonospora marina | S. marina | ocean | 5 965 593 bp |
| Thermaerobacter marianensi | T. marianensi | ocean (isolated at a depth of >10000 meters) | 2 844 696 bp |
| Shewanella sediminis | S. sediminis | ocean | 5 517 674 bp |
| Alpha proteobacterium HIMB59 |
-proteobacterium HIMB59
|
ocean surface | 1 410 127 bp |
| Oceanithermus profundus | O. profundus | ocean (isolated from a hydrothermal vent in the Pacific Ocean) | 2 303 940 bp |
| Salinispora arenicola | S. arenicola | ocean | 5 786 361 bp |