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. Author manuscript; available in PMC: 2020 Jun 17.
Published in final edited form as: Cell. 2020 Jan 16;180(3):536–551.e17. doi: 10.1016/j.cell.2019.12.018

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Experimental Models: Organisms/Strains
Tg(elavl3:H2B-GCaMP6s) (Vladimirov et al., 2014) N/A
Tg(gSA2AzGFF152B) (Takeuchi et al., 2015) N/A
Tg(Huc:H2B-GCaMP6s; GAD1b:RFP) (Freeman et al., 2014; Satou et al, 2013) N/A
Tg(UAS:GCaMP6s) (Filosa et al, 2016) N/A
Software and Algorithms
μManager Open Imaging https://micro-manager.org/
MATLAB (Behavioral and imaging analysis, modeling) MathWorks https://www.mathworks.com/products/matlab.html
FIJI (ImageJ) (Image Processing) NIH http://fiji.sc
Custom data-processing pipeline for LFM data (Prevedel et al, 2014) https://static-content.springer.com/esm/art%3A10.1038%2Fnmeth.2964/MediaObjects/41592_2014_BFnmeth2964_MOESM189_ESM.zip
Demixed Principal Component Analysis (dPCA) (Kobak et al, 2016) https://github.com/machenslab/dPCA
t-Distributed Stochastic Neighbor Embedding (t-SNE) (Maaten and Hinton, 2008) https://lvdmaaten.github.io/tsne/
Independent Component Analysis (FastICA) (Hyvarinen and Oja, 2000) https://research.ics.aalto.fi/ica/fastica/
Scanlmage (Pologruto et al, 2003) http://scanimage.vidriotechnologies.com/display/SIH/ScanImage+Home
CalmAn-MATLAB (Giovannucci et al, 2019) https://github.com/flatironinstitute/CaImAn-MATLAB
DeepLabCut 2.0 (Nath et al, 2019) https://github.com/AlexEMG/DeepLabCut