Table 2.

Haplotype phasing small variants.

Chr	CCS			stLFR
	Heterozygous	Phased SNV	Phased rate(%)	Heterozygous	Phased SNV	Phased rate(%)
1	169,906	169,174	99.57	172,790	172,682	99.94
2	167,518	166,806	99.57	103,486	103,435	99.95
3	143,618	142,968	99.55	101,126	101,070	99.94
4	151,585	151,033	99.64	102,317	102,274	99.96
5	128,296	127,772	99.59	75,908	75,874	99.96
6	131,798	131,325	99.64	70,091	70,064	99.96
7	123,689	123,253	99.65	68,411	68,379	99.95
8	120,782	120,391	99.68	72,564	72,536	99.96
9	94,946	94,653	99.69	53,789	53,762	99.95
10	99,256	98,894	99.64	60,279	60,254	99.96
11	100,822	100,465	99.65	49,744	49,724	99.96
12	101,519	101,168	99.65	172,818	172,720	99.94
13	75,515	75,282	99.69	43,553	43,531	99.95
14	68,223	67,954	99.61	37,388	37,370	99.95
15	67,759	67,549	99.69	34,105	34,089	99.95
16	69,062	68,823	99.65	145,073	145,017	99.96
17	54,620	54,358	99.52	151,677	151,603	99.95
18	59,025	58,847	99.7	130,925	130,865	99.95
19	48,314	48,195	99.75	135,438	135,376	99.95
20	42,939	42,750	99.56	126,619	126,552	99.95
21	39,076	39,010	99.83	122,931	122,888	99.97
22	31,029	30,979	99.84	111,751	111,697	99.95
X	—	—	—	4,418	3,636	82.3
Y	—	—	—	4,444	4,354	97.97
Genome	2,089,297	2,081,649	99.63	2,151,645	2,149,752	99.91