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Testing congruent gene trees for the loci that fit the GTRGAMMA model. The LRT for congruent gene trees was applied to the loci of 20 data sets that fit the GTRGAMMA model. The gray bars are the proportions of loci rejecting the hypothesis of congruent gene trees when the LRT was applied to all loci. The black bars are the proportions of loci rejecting the hypothesis of congruent gene trees when the LRT was only applied to the loci that fit the GTRGAMMA model.
