Table 1.
Summary of 22 phylogenomic data sets analyzed here, in addition to those of Reid et al. (2014).
| Data set | OTUs | Loci | Markers |
|---|---|---|---|
| Ant (Blaimer et al. 2018b) | 10/153 | 1509/1763 | UCE |
| Bee (Sann et al. 2018) | 10/95 | 193/195 | CDS |
| Bird (Prum et al. 2015) | 10/198 | 259/259 | CDS |
| Lizard (Blom et al. 2017) | 10/29 | 1831/1852 | Exon |
| Brittlestar (O’Hara et al. 2019) | 10/46 | 407/416 | CDS |
| Butterfly (Espeland et al. 2018) | 10/207 | 325/352 | Exon |
| CarpenterBee (Blaimer et al. 2018a) | 10/179 | 597/753 | UCE |
| Cichlid (McGee et al. 2016) | 10/50 | 924/1043 | UCE |
| Clupeocephalan (Straube et al. 2018) | 10/52 | 48/829 | Exon |
| Cracids (Hosner et al. 2016) | 10/23 | 430/430 | UCE |
| Darter (MacGuigan and Near 2018) | 10/112 | 363/30,636 | RADseq |
| Diplostomoidea (Locke et al. 2018) | 10/12 | 324/517 | UCE |
| Gallopheasant (Meiklejohn et al. 2016) | 10/18 | 1479/1479 | UCE |
| Hemimastigophora (Lax et al. 2018) | 10/61 | 239/351 | CDS |
| Lepanthes (Bogarín et al. 2018) | 10/33 | 334/433 | CDS |
| Mammal2018 (Wu et al. 2018) | 10/90 | 4709/5162 | CDS |
| Mammal2017 (Scornavacca and Galtier 2017) | 10/97 | 108/110 | CDS |
| Metazoan2015 (Whelan et al. 2015) | 10/76 | 36/115 | CDS |
| Shrew (Giarla and Esselstyn 2015) | 10/19 | 966/1112 | UCE |
| Squirrel (McLean et al. 2019) | 10/74 | 3209/3951 | UCE |
| Weevil (Aitken et al. 2017) | 10/67 | 318/521 | CDS |
| Fish (Cui et al. 2013) | 10/27 | 1183/1183 | CDS |
Notes: In the columns OTUs and Loci, the bottom number is the count of taxa (or loci) in the original data set; the top number is the count of taxa (or loci) after data reduction for Questions 3 and 4 (see Materials and Methods section).