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. Author manuscript; available in PMC: 2020 Jun 18.
Published in final edited form as: Proceedings (IEEE Int Conf Bioinformatics Biomed). 2017 Jan 19;2016:178–183. doi: 10.1109/bibm.2016.7822515

Table III:

True positive rates at 1% false positive rate on array #2. The numbers in parentheses designate the number of positive probes in each array. Columns corresponding to the shallow methods: PERGO, RankMotif++, Seed & Wobble and KmerHMM are copied from [19], [4].

TF Method
PRG RKM S&W KHM DBD DEBD
CEH-22 (3490) 0.2 0.33 0.25 0.32 0.32 0.52
Oct-1 (3107) 0.27 0.24 0.20 0.31 0.18 0.39