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Ranking of the tested software tools based on the quantitative comparison of their performance in 3D segmentation of single cells in 3D datasets.
| Tool | Neurosphere | Embryo | Total | Final Rank |
|---|---|---|---|---|
| penalty points | penalty points | penalty points | ||
| IT3DImageJSuite | 8 | 4 | 12 | 6 |
| LoS | 6 | 6 | 12 | 6 |
| MINS | 5 | 2 | 7 | 3 |
| OpenSegSPIM | 3 | 8 | 11 | 5 |
| RACE | 7 | 9 | 16 | 7 |
| SAMA | 9 | 7 | 16 | 7 |
| Vaa3D | 4 | 5 | 9 | 4 |
| 3D-Cell-Annotator | 1 | 1 | 2 | 1 |
| XPIWIT | 2 | 3 | 5 | 2 |
