Table 2.
Running Time (Seconds) and Memory Usage (Megabytes, in Parenthesis) on the Simulated Data
| Dataset | TwoPaCo + BubbZ |
Minimap2 | MashMap2 | ||
|---|---|---|---|---|---|
| TwoPaCo | BubbZ | Total | |||
| 0.03 | 7 (1,240) | 1 (36) | 8 (1,240) | 6 (904) | 3 (147) |
| 0.06 | 6 (1,291) | 1 (51) | 7 (1,291) | 8 (820) | 3 (154) |
| 0.09 | 6 (1,246) | 1 (74) | 7 (1,246) | 10 (824) | 3 (168) |
| 0.11 | 6 (1,292) | 1 (77) | 7 (1,292) | 10 (634) | 3 (172) |
| 0.14 | 6 (1,250) | 2 (80) | 8 (1,250) | 15 (1,341) | 3 (171) |
| 0.17 | 6 (1,277) | 2 (80) | 8 (1,277) | 15 (1,340) | 3 (157) |
| 0.20 | 6 (1,238) | 2 (82) | 8 (1,238) | 16 (1,113) | 3 (165) |
| 0.22 | 5 (1,237) | 2 (71) | 7 (1,237) | 16 (614) | 4 (164) |
| 0.25 | 5 (1,207) | 2 (82) | 7 (1,207) | 16 (1,204) | 3 (168) |
Each dataset is labeled by its corresponding divergence.