Table 2.

Table shows the different parameters/threshold we have used for selecting differentially coexpressed gene pairs for other methods.

Method	No of gene pairs selected	Parameters used
CoXpress	1000	Used cluster.gene and cutree function with corr.coef threshold 0.6 and cutting height of hierarchical tree h = 0.4. Robustness parameter threshold = 800
DiffCoEX	1000	Used Spearman correlation to compute adjacency matrix for each phenotype condition. Use default soft-thresholding parameter β = 6 for computation of distance score matrix
DiffCoMO	1000	No of modules (population size) is taken as 50 and the number of generation is 200