Table 2.
Expected Segregations depending on the parental SNP configurations and observed SNP numbers for each parental configuration.
| Parental Configuration | Progeny SNP Marker Classes | SEG | No SNP | |||
|---|---|---|---|---|---|---|
| P1 | P2 | F1a | F1b | F1c | ||
| 0/0 | 0/0 | 0/0 | — | — | noS | 8652 |
| 0/0 | 0/1 | 0/0 | 0/1 | — | 1:1 | 977 |
| 0/0 | 1/1 | — | 0/1 | — | noS | 37 |
| 0/1 | 0/0 | 0/0 | 0/1 | — | 1:1 | 658 |
| 0/1 | 0/1 | 0/0 | 0/1 | 1/1 | 1:2:1 | 1063 |
| 0/1 | 1/1 | — | 0/1 | 1/1 | 1:1 | 234 |
| 1/1 | 0/0 | — | 0/1 | — | noS | 31 |
| 1/1 | 0/1 | — | 0/1 | 1/1 | 1:1 | 569 |
| 1/1 | 1/1 | — | — | 1/1 | noS | 852 |
| Total number of SNP: | 13073 | |||||
| No of segregating SNP: | 3501 | |||||
| No of non-segregating SNP: | 9572 | |||||
Reference SNP Allele = 0, Alternative SNP Allele = 1.
Parental or Progeny Genotype Configurations (unphased):
0/0 GT homozygous for Reference Allele.
0/1 GT heterozygous for Reference and Alternative Allele.
1/1 GT homozygous for Alternative Allele.
P1 P2: Parent 1 and 2, F1i: expected SNP marker classes in F1 progeny, SEG: expected segregation ratios of SNP marker classes (noS = no segregation), No SNP numbers of observed SNP with the corresponding parental configuration.